MicroRNA-mRNA expression profiles and their potential role in cadmium stress response in Brassica napus

Fu, Ying; Mason, Annaliese S.; Zhang, Yaofeng; Lin, Baogang; Xiao, Meili; Fu, Donghui; Yu, Huasheng

doi:10.1186/s12870-019-2189-9

BMC Plant Biology

Table 3 The anti-regulation miRNA-mRNA interaction pairs in root and shoot tissues of Brassica napus seedlings in response to Cd stress

From: MicroRNA-mRNA expression profiles and their potential role in cadmium stress response in Brassica napus

Tissue	miRNA Family	miRNA Name	Targets	miRNA expression level			mRNA expression level			Target annotation
Tissue	miRNA Family	miRNA Name	Targets	log₂Ratio	FDR	regulate	log₂Ratio	FDR	regulate	Target annotation
root	MIR395	bna-miR395a	BnaA03g04440D	3.01	0.0000	up	−3.22	0.0012	down	ABA-binding protein (ABAR)
root	MIR398	bna-miR398a-3p	BnaA04g16310D	2.85	0.0000	up	−1.69	0.0011	down	chloroplastic copper/zinc superoxide dismutase 2 (CSD2)
root	MIR398	bna-miR398b-3p	BnaA04g16310D	2.32	0.0000	up	−1.69	0.0011	down	chloroplastic copper/zinc superoxide dismutase 2 (CSD2)
root	MIR169_2	bna-miR169_2b	BnaC03g08060D	−1.92	0.0076	down	4.74	0.0034	up	NAD(P)H dehydrogenase B4 protein (NDB4)
root	MIR398	bna-miR398a-3p	BnaC04g39580D	2.85	0.0000	up	−1.77	0.0000	down	chloroplastic copper/zinc superoxide dismutase 2 (CSD2)
root	MIR398	bna-miR398b-3p	BnaC04g39580D	2.32	0.0000	up	−1.77	0.0000	down	chloroplastic copper/zinc superoxide dismutase 2 (CSD2)
root	MIR398	bna-miR398b-3p	BnaC08g42970D	2.32	0.0000	up	−2.82	0.0015	down	cytosolic copper/zinc superoxide dismutase (CSD1)
root	MIR398	bna-miR398b-3p	BnaCnng33420D	2.32	0.0000	up	−1.85	0.0000	down	copper-zinc superoxide dismutase copper chaperone (CCS)
shoot	MIR2111	bna-miR2111c-5p	BnaA09g44060D	2.1	0.1599	up	−2	0.0001	down	1-aminocyclopropane-1-carboxylate oxidase (ACO1)
shoot	MIR395	bna-miR395a	BnaC09g46440D	2.83	0.0000	up	−2.01	0.0000	down	sulfate transporter 2;1 (SULTR2;1)
shoot	MIR395	bna-miR395b	BnaC09g46440D	2.83	0.0000	up	−2.01	0.0000	down	sulfate transporter 2;1 (SULTR2;1)
shoot	MIR397	bna-miR397	BnaC04g07220D	3.84	0.0000	up	−2.29	0.0041	down	laccase-like multicopper oxidase 4 (LAC4)
shoot	MIR397	bna-miR397	BnaA07g26900D	3.84	0.0000	up	−3.22	0.0001	down	zinc finger C-×8-C-×5-C-×3-H type family protein (CDM1)
shoot	MIR408	bna-miR408	BnaA04g11970D	2.03	0.0001	up	−1.36	0.0032	down	proline-rich protein (PRP2)
shoot	MIR398	bna-miR398b-3p	BnaA02g18700D	1.07	0.0530	up	−1.29	0.0007	down	FCS like zinc finger 6 (FLZ6)
shoot	NA	bna-miR6029	BnaA03g11200D	−0.65	0.1559	down	1.01	0.0035	up	inner centromere protein (INCENP)

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