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Table 1 Overview and comparison of HAK genes in Saccharum spontaneum and Sorghum bicolor

From: Genome-wide systematic characterization of the HAK/KUP/KT gene family and its expression profile during plant growth and in response to low-K+ stress in Saccharum

Sorghum bicolor

Saccharum spontaneum

Similarityf

Gene

AAa

pIb

Mwc (kDa)

TMSd

P.L.e

Gene

AAa

pIb

Mwc (kDa)

TMSd

P.L.e

Sobic.006G061300

788

8.75

87.13

12

PM

SsHAK1

780

8.83

86.84

12

PM

94.42%

Sobic.003G418100

783

8.91

87.53

12

PM

SsHAK2

788

8.85

88.18

12

PM

94.61%

Sobic.003G164400

811

8.4

89.60

10

PM/ER

SsHAK3

785

8.69

86.79

11

PM

97.34%

Sobic.007G153001

706

8.37

78.02

9

PM/ER

SsHAK4

702

8.90

78.08

9

PM

92.92%

Sobic.003G413600

775

8.78

86.36

11

PM

SsHAK5a

705

8.39

78.76

11

PM

85.64%

Sobic.003G413700

775

8.54

86.42

11

PM

SsHAK5b

750

7.58

83.86

10

PM

93.35%

Sobic.002G411500

788

8.8

87.72

13

PM

SsHAK7

818

8.81

91.32

13

PM/Vacu

90.95%

Sobic.001G379900

805

7.36

89.80

12

PM/Cyto

SsHAK8

770

8.36

85.88

11

PM/ER

93.18%

Sobic.002G417500

792

6.96

87.53

12

PM/Cyto

SsHAK9

743

8.39

82.35

11

PM/ER

91.34%

Sobic.010G197500

820

8.37

91.15

10

PM/ER

SsHAK10

755

8.94

83.57

10

PM/Vacu

90.52%

Sobic.006G213500

805

8.33

89.66

13

PM/ER

SsHAK11

719

7.24

80.33

12

PM/ER

92.06%

Sobic.007G075100

790

8.21

88.50

14

PM

SsHAK12

509

8.54

57.87

8

PM

87.93%

Sobic.010G224400

779

8.97

85.92

12

PM/Cyto

SsHAK13

757

8.62

83.38

12

PM/ER

95.76%

Sobic.002G313900

843

5.71

93.38

12

PM/ER

SsHAK14

811

5.88

90.03

11

PM

91.12%

Sobic.006G210700

743

8.85

82.93

12

PM/ER

SsHAK15

852

6.00

95.04

12

PM/ER

90.12%

Sobic.001G184000

817

8.91

92.60

12

PM

SsHAK16a

487

9.26

55.84

8

PM/Cyto

81.06%

Sobic.001G184100

810

8.61

91.65

11

PM/ER

SsHAK16b

802

8.69

91.07

12

PM/ER

96.03%

Sobic.002G220600

708

8.77

78.15

12

PM

SsHAK17

701

9.06

78.01

12

PM

93.57%

Sobic.002G130800

787

8.69

88.61

14

PM/ER

SsHAK18

788

8.35

88.56

14

PM/ER

96.45%

Sobic.006G062100

746

7.29

83.31

12

PM/Golgi

SsHAK19a

767

7.00

85.62

10

PM/Golgi

94.78%

Sobic.006G062100

746

7.29

83.31

12

PM/Golgi

SsHAK19b

730

6.65

81.30

9

PM/Vacu

93.33%

Sobic.004G160000

735

8.46

80.43

12

PM/ER

SsHAK20a

730

8.81

80.09

12

PM/ER

97.01%

Sobic.006G061700

788

8.66

88.27

11

PM/Cyto

SsHAK20b

794

8.60

89.03

11

PM/Golgi

83.01%

Sobic.001G183700

828

8.51

92.29

11

PM/Cyto

SsHAK21

818

8.22

91.50

11

PM/ER

95.17%

Sobic.002G001800

931

8.61

102.07

12

PM/Chlo

SsHAK22

967

9.08

106.49

11

PM/Vacu

88.52%

Sobic.002G188600

852

6.78

93.82

12

PM/ER

SsHAK23

846

6.55

93.13

12

PM

98.00%

Sobic.010G112800

773

8.39

85.44

12

PM/Chlo

SsHAK24

698

7.62

77.44

10

PM/Chlo

96.94%

Sobic.004G250700

774

7.34

86.29

13

PM/ER

SsHAK25

800

7.13

89.27

14

PM/ER

94.62%

Sobic.007G209900

774

9.08

82.47

10

PM/Chlo

SsHAK26

744

8.98

82.93

10

PM/Chlo

89.63%

Sobic.001G184300

814

8.32

91.82

11

PM/ER

SsHAK27

812

8.44

91.41

11

PM/ER

97.67%

  1. PM Plasma membrane, ER Endoplasmic reticulum, Vacu Vacuole, Cyto Cytoplasm, Golgi Golgi body, Chlo Chloroplast
  2. a Amino acid number in HAK protein sequences
  3. b Isoelectric point (pI) predicted by ExPASy (https://web.expasy.org/compute_pi/)
  4. c Molecular weight (Mw) predicted by ExPASy (https://web.expasy.org/compute_pi/)
  5. d Number of transmembrane domains possessed by HAKs, as predicted by TMHHM Server v.2.0 (http://www.cbs.dtu.dk/ services/TMHMM/)
  6. e Subcellular location of the HAK proteins predicted by WoLF PSORT (https://www.genscript.com/wolf-psort.html)
  7. f Protein sequence similarity between sorghum and sugarcane calculated by BLASTP
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BMC Plant Biology

ISSN: 1471-2229

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