Skip to main content

Table 1 Information on counts and percentage of reads mapped to the Brachypodium reference genome V3.1 in each of the libraries

From: Transcriptome analysis of responses in Brachypodium distachyon overexpressing the BdbZIP26 transcription factor

 

Replicate 1

Replicate 2

Replicate 3

Sample

Treatment

Sequences

Alignment Percent

Sequences

Alignment Percent

Sequences

Alignment Percent

TR4

H2O

53,249,542

88.30%

52,359,476

90.82%

45,775,614

88.02%

TR4

SALT

48,944,606

91.12%

57,529,036

89.53%

38,814,320

90.97%

TR6

H2O

38,114,942

86.69%

40,126,408

89.97%

NA

NA

TR6

SALT

45,966,688

89.27%

48,999,138

85.98%

NA

NA

TR7

H2O

57,330,182

88.78%

56,880,752

87.76%

54,955,330

90.37%

TR7

SALT

57,503,736

87.18%

58,388,176

90.83%

39,674,666

87.78%

WT

H2O

76,734,506

91.64%

80,661,516

91.29%

NA

NA

WT

SALT

47,626,852

91.63%

55,025,324

91.53%

NA

NA

  1. TR4: BdbZIP26:GFP transgenic line 4; TR6: BdbZIP26:GFP transgenic line 6; TR7: BdbZIP26:GFP transgenic line7; WT: wild type Brachypodium distachyon. Water is the control treatment and salt is the long-term salt treatment (100 mM NaCl for 3 wks)