Table 3 Comparison of wheat 15 K SNP array data between TR77 and its parents
Chromosome | No. of markers | No. of valid markers in materials | No. of same markers (TR77 vs 7182) | Percentage of same markers (TR77 vs 7182) | No. of same markers (TR77 vs Trs-372) | Percentage of same markers (TR77 vs Trs-372) | No. of same markers (TR77 vs P. huashanica) | Percentage of same markers (TR77 vs P. huashanica) |
|---|---|---|---|---|---|---|---|---|
1A | 607 | 408 | 211 | 52% | 304 | 75% | 23 | 6% |
1B | 670 | 438 | 228 | 52% | 229 | 52% | 32 | 7% |
1D | 337 | 234 | 171 | 73% | – | – | 5 | 2% |
2A | 907 | 607 | 389 | 64% | 166 | 27% | 21 | 3% |
2B | 736 | 431 | 289 | 67% | 275 | 64% | 17 | 4% |
2D | 597 | 404 | 353 | 87% | – | – | 8 | 2% |
3A | 594 | 391 | 294 | 75% | 149 | 38% | 27 | 7% |
3B | 997 | 616 | 398 | 65% | 432 | 70% | 20 | 3% |
3D | 505 | 357 | 319 | 89% | – | – | 11 | 3% |
4A | 766 | 545 | 406 | 74% | 395 | 72% | 11 | 2% |
4B | 589 | 348 | 201 | 58% | 196 | 56% | 15 | 4% |
4D | 248 | 165 | 148 | 90% | – | – | 12 | 7% |
5A | 690 | 414 | 166 | 40% | 203 | 49% | 32 | 8% |
5B | 763 | 462 | 222 | 48% | 286 | 62% | 22 | 5% |
5D | 518 | 360 | 180 | 50% | – | – | 104 | 29% |
6A | 463 | 265 | 209 | 79% | 80 | 30% | 11 | 4% |
6B | 768 | 446 | 306 | 69% | 226 | 51% | 67 | 15% |
6D | 404 | 279 | 260 | 93% | – | – | 11 | 4% |
7A | 735 | 490 | 326 | 67% | 320 | 65% | 26 | 5% |
7B | 640 | 404 | 354 | 88% | 228 | 56% | 12 | 3% |
7D | 665 | 462 | 412 | 89% | – | – | 12 | 3% |
A genome | 4762 | 3120 | 2001 | 64% | 1617 | 52% | 151 | 5% |
B genome | 5163 | 3145 | 1998 | 64% | 1872 | 60% | 185 | 6% |
D genome | 3274 | 2261 | 1843 | 82% | – | – | 163 | 7% |
Total | 13,199 | 8526 | 5842 | 69% | 3489 | 41% | 499 | 6% |