Genome-wide identification and characterization of cucumber bHLH family genes and the functional characterization of CsbHLH041 in NaCl and ABA tolerance in Arabidopsis and cucumber

Li, Jialin; Wang, Ting; Han, Jing; Ren, Zhonghai

doi:10.1186/s12870-020-02440-1

Table 1 bHLH genes in Cucumber

From: Genome-wide identification and characterization of cucumber bHLH family genes and the functional characterization of CsbHLH041 in NaCl and ABA tolerance in Arabidopsis and cucumber

CsbHLH	Gene ID	Location	Gene length	Amino acid length	pI
001	CsaV3_1G005290	Chr1:3503806–3,504,411	1909	84	5.04
002	CsaV3_1G011300	Chr1:6972358–6,976,069	4167	236	5.78
003	CsaV3_3G022420	Chr3:19737551–19,739,874	958	502	5.7
004	CsaV3_3G049150	Chr3:40071324–40,074,834	1400	689	5.11
005	CsaV3_3G001710	Chr3:1295970–1,297,898	5601	643	6.21
006	CsaV3_3G000850	Chr3:656062–658,628	6057	448	8.65
007	CsaV3_1G039580	Chr1:24945063–24,953,384	1684	319	5.78
008	CsaV3_2G007370	Chr2:3725743–3,731,272	605	707	6.09
009	CsaV3_4G032110	Chr4:22635255–22,641,052	3486	551	6.25
010	CsaV3_1G043790	Chr1:28804330–28,811,620	6167	960	6.4
011	CsaV3_2G015700	Chr2:13017831–13,023,291	1802	336	5.64
012	CsaV3_6G000530	Chr6:351129–356,108	2050	645	5.51
013	CsaV3_3G007980	Chr3:6919411–6,921,670	2306	650	5.83
014	CsaV3_2G010120	Chr2:6877325–6,878,870	2524	323	6.02
015	CsaV3_7G025510	Chr7:14980031–14,984,292	3589	533	6.06
016	CsaV3_6G009090	Chr6:7311297–7,315,687	3711	486	6.35
017	CsaV3_2G028950	Chr2:18953613–18,956,324	3528	348	8.3
018	CsaV3_7G007460	Chr7:4647975–4,650,800	3316	335	6.64
019	CsaV3_6G044570	Chr6:26373287–26,375,739	3723	330	5.3
020	CsaV3_6G044560	Chr6:26366139–26,368,813	11,538	309	5.81
021	CsaV3_5G026500	Chr5:21650877–21,655,135	2678	624	5.04
022	CsaV3_6G044730	Chr6:26485325–26,487,050	1415	342	4.86
023	CsaV3_2G030090	Chr2:19685080–19,689,447	4059	363	4.57
024	CsaV3_6G043370	Chr6:25541506–25,544,586	8321	416	5.2
025	CsaV3_6G044580	Chr6:26382822–26,384,588	3478	276	6.05
026	CsaV3_2G035250	Chr2:23586273–23,591,605	3855	239	6.77
027	CsaV3_2G008770	Chr2:5179234–5,186,154	7290	246	4.92
028	CsaV3_6G008940	Chr6:7177946–7,179,613	5695	432	5.42
029	CsaV3_6G014370	Chr6:10430376–10,432,021	6113	308	4.98
030	CsaV3_5G033960	Chr5:27092009–27,094,880	4184	372	5.77
031	CsaV3_6G036080	Chr6:20032486–20,036,831	1493	242	9.03
032	CsaV3_1G033410	Chr1:20481133–20,483,811	5529	256	9.24
033	CsaV3_1G009900	Chr1:6174783–6,178,372	6920	551	5.6
034	CsaV3_2G001440	Chr2:370393–376,506	1545	543	8.37
035	CsaV3_1G031920	Chr1:18957508–18,969,046	2275	242	5.03
036	CsaV3_7G004510	Chr7:3234760–3,236,331	1320	211	6.77
037	CsaV3_4G034440	Chr4:24394485–24,395,550	3489	239	7.1
038	CsaV3_4G029740	Chr4:19342473–19,344,831	5460	253	6.17
039	CsaV3_3G000950	Chr3:733695–738,681	1011	773	5.11
040	CsaV3_2G026610	Chr2:18201502–18,202,748	2627	240	7.26
041	CsaV3_1G040580	Chr1:25826012–25,829,490	1816	492	7.03
042	CsaV3_6G037080	Chr6:20849605–20,855,801	4137	651	5.91
043	CsaV3_6G041730	Chr6:24304724–24,306,996	1246	235	6.42
044	CsaV3_1G003910	Chr1:2423148–2,424,832	2711	266	6.87
045	CsaV3_3G013690	Chr3:10293079–10,294,740	2245	191	8.64
046	CsaV3_1G006280	Chr1:4002735–4,008,902	4367	566	9.01
047	CsaV3_1G002260	Chr1:1450554–1,451,954	1411	261	6.16
048	CsaV3_3G039100	Chr3:32125102–32,130,846	2115	370	5.74
049	CsaV3_5G033600	Chr5:26846039–26,850,063	5332	571	6.09
050	CsaV3_1G006650	Chr1:4277323–4,279,125	2566	279	6.1
051	CsaV3_6G001900	Chr6:1303975–1,307,218	4986	248	9.26
052	CsaV3_1G037610	Chr1:23567571–23,568,986	1928	309	4.78
053	CsaV3_6G037070	Chr6:20836169–20,845,986	5647	263	6.08
054	CsaV3_2G026190	Chr2:17969523–17,971,339	1844	330	5.15
055	CsaV3_3G034600	Chr3:29292016–29,296,383	2259	695	5.24
056	CsaV3_3G044120	Chr3:35995420–35,997,451	4852	272	5.09
057	CsaV3_2G005070	Chr2:2751170–2,752,663	3663	318	5.74
058	CsaV3_2G014750	Chr2:12321166–12,324,655	1661	343	6.2
059	CsaV3_7G027630	Chr7:17195587–17,199,883	1509	317	6
060	CsaV3_2G025890	Chr2:17778099–17,780,726	3295	342	6.26
061	CsaV3_2G030500	Chr2:20027274–20,029,389	2181	372	4.71
062	CsaV3_3G015900	Chr3:11810548–11,813,843	2822	547	6.88
063	CsaV3_7G000080	Chr7:185656–189,146	2627	457	5.85
064	CsaV3_1G000190	Chr1:132006–133,915	2323	276	7.03
065	CsaV3_3G028610	Chr3:25161463–25,169,489	3059	540	5.7
066	CsaV3_2G003660	Chr2:1833037–1,837,221	6474	422	6.1
067	CsaV3_4G002800	Chr4:1745825–1,749,669	8026	168	7.65
068	CsaV3_1G045830	Chr1:31650489–31,656,184	4367	395	6.39
069	CsaV3_4G026430	Chr4:15704947–15,706,451	3065	196	6.51
070	CsaV3_3G007090	Chr3:6381666–6,383,510	5744	359	5.94
071	CsaV3_3G049050	Chr3:40003473–40,010,806	1802	322	7.73
072	CsaV3_1G005810	Chr1:3727778–3,731,264	2031	443	9.02
073	CsaV3_2G026540	Chr2:18154564–18,158,701	3855	380	5.01
074	CsaV3_4G035310	Chr4:24884098–24,888,333	2900	403	5.7
075	CsaV3_3G020750	Chr3:16961726–16,964,548	7333	248	7.09
076	CsaV3_5G018750	Chr5:14293739–14,297,926	3510	534	5.2
077	CsaV3_4G034660	Chr4:24537693–24,539,435	1700	409	6.38
078	CsaV3_7G026520	Chr7:16047841–16,051,016	3844	490	6.04
079	CsaV3_1G001960	Chr1:1286661–1,290,828	5186	196	7.64
080	CsaV3_5G040480	Chr5:31836009–31,840,665	2228	245	5.67
081	CsaV3_6G002130	Chr6:1472037–1,473,566	1504	161	5.12
082	CsaV3_1G028780	Chr1:15708212–15,711,935	2358	423	6.34
083	CsaV3_5G024030	Chr5:18711066–18,713,891	3741	285	6.21
084	CsaV3_4G000380	Chr4:228607–230,307	5797	342	4.89
085	CsaV3_4G034980	Chr4:24696914–24,698,535	1065	245	6.18
086	CsaV3_3G014190	Chr3:10642450–10,643,959	1742	203	7.81
087	CsaV3_7G035000	Chr7:22142359–22,144,409	1621	394	6.54
088	CsaV3_2G016810	Chr2:14091802–14,092,813	4235	216	9.77
089	CsaV3_6G012850	Chr6:8973920–8,976,038	2826	262	9.23
090	CsaV3_5G031540	Chr5:25725825–25,732,273	1729	679	7.3
091	CsaV3_2G011050	Chr2:8296805–8,299,080	1004	496	5.5
092	CsaV3_2G013060	Chr2:10626443–10,627,763	5030	280	9.14
093	CsaV3_3G048260	Chr3:39394424–39,397,324	4187	326	4.94
094	CsaV3_1G039160	Chr1:24662874–24,666,933	2825	359	5.94
095	CsaV3_7G008580	Chr7:5322491–5,324,405	2588	254	7.22
096	CsaV3_2G029940	Chr2:19575197–19,577,442	4258	308	6.01
097	CsaV3_3G011010	Chr3:8707121–8,711,973	6448	382	5.08
098	CsaV3_3G021970	Chr3:19073471–19,076,098	2460	377	5.08
099	CsaV3_6G028530	Chr6:16812784–16,815,830	2030	207	11.79
100	CsaV3_6G037460	Chr6:21181685–21,184,516	4024	299	5.66
101	CsaV3_4G029750	Chr4:19361035–19,364,776	2871	211	9.21
102	CsaV3_6G033930	Chr6:18737868–18,742,274	1923	333	5.71
103	CsaV3_6G036240	Chr6:20141242–20,142,683	4656	97	9.18
104	CsaV3_3G012210	Chr3:9421374–9,425,037	4979	227	5.7
105	CsaV3_3G022870	Chr3:20405212–20,408,271	3243	236	6.13
106	CsaV3_3G042970	Chr3:34884792–34,886,594	1529	244	8.4
107	CsaV3_6G018830	Chr6:13512926–13,515,085	1667	253	7.06
108	CsaV3_2G030310	Chr2:19895721–19,897,132	4390	240	9.2
109	CsaV3_1G002670	Chr1:1668618–1,674,219	2118	359	8.65
110	CsaV3_3G045440	Chr3:37108680–37,112,535	1645	430	6.69
111	CsaV3_5G012430	Chr5:7900420–7,905,450	2159	451	6.33
112	CsaV3_1G011460	Chr1:7106592–7,110,120	3046	360	4.75
113	CsaV3_7G008090	Chr7:5057906–5,059,973	4406	255	6.11
114	CsaV3_5G026380	Chr5:21538651–21,541,239	4345	173	9.15
115	CsaV3_UNG229040	scaffold115:93241–95,547	1441	274	9.42
116	CsaV3_3G027730	Chr3:24067204–24,073,678	9817	529	5.88
117	CsaV3_7G003870	Chr7:2853486–2,854,424	6196	313	5.32
118	CsaV3_3G016560	Chr3:12365460–12,367,641	2831	253	8.6
119	CsaV3_1G012350	Chr1:7668571–7,671,887	2272	205	6.16
120	CsaV3_5G003430	Chr5:2204438–2,205,442	3080	256	7.75
121	CsaV3_6G047120	Chr6:27815147–27,818,761	2674	337	6.13
122	CsaV3_1G042640	Chr1:27559193–27,563,048	2452	438	7.72
123	CsaV3_3G005540	Chr3:4716554–4,722,201	1766	439	6.41
124	CsaV3_6G046660	Chr6:27537459–27,541,954	1725	357	8.44
125	CsaV3_5G003420	Chr5:2191536–2,193,265	1497	261	5.59
126	CsaV3_5G003410	Chr5:2180337–2,183,163	4495	252	7.01
127	CsaV3_6G049510	Chr6:28902722–28,905,982	3614	405	5.35
128	CsaV3_4G003860	Chr4:2368080–2,373,266	3260	357	8.51
129	CsaV3_7G031270	Chr7:19779388–19,783,470	749	420	8.28
130	CsaV3_3G039080	Chr3:32107556–32,110,621	3490	367	9.16
131	CsaV3_6G045070	Chr6:26672336–26,673,833	938	229	10.26
132	CsaV3_6G051560	Chr6:29996501–29,997,250	1571	250	5.66
133	CsaV3_7G027460	Chr7:17033739–17,042,484	2825	692	5.66
134	CsaV3_5G037950	Chr5:30085680–30,087,603	1391	92	9.09
135	CsaV3_1G002240	Chr1:1440343–1,441,301	2067	93	9.09
136	CsaV3_5G032530	Chr5:26313766–26,315,796	1914	96	9.17
137	CsaV3_1G009880	Chr1:6153304–6,155,828	4261	373	6.61
138	CsaV3_7G033460	Chr7:21082838–21,087,117	3175	298	6.78
139	CsaV3_7G007860	Chr7:4913547–4,914,938	8745	211	6.35
140	CsaV3_4G010010	Chr4:7769516–7,771,744	4296	333	5.11
141	CsaV3_1G003270	Chr1:2026829–2,032,886	4082	619	9.19
142	CsaV3_5G031750	Chr5:25868912–25,871,372	4279	365	5.84

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