Comparative transcriptome profiling reveals cold stress responsiveness in two contrasting Chinese jujube cultivars

Table 1 Summary of the RNA-seq data collected from ‘Dongzao’ and ‘Jinsixiaozao’

Sample	Raw data	Clean reads	Q30(%)	GC(%)	Genome map Rate	Gene map Rate	Expressed Gene	Expressed Transcripts	Novel Transcripts	Alternative Splicing	Indel
DZCK	89,647,985	87,382,161	86.91	44.19	72.64%	74.96%	20,411	25,818	988	90,011	4342
DZA	89,648,769	87,565,991	88.23	44.12	73.14%	75.11%	20,362	25,710	954	87,733	8628
DZB	89,648,625	87,947,768	87.87	44.33	73.84%	76.32%	20,431	25,881	980	88,983	5811
DZC	89,648,887	87,910,197	88.73	44.19	73.52%	75.50%	20,192	25,458	924	85,154	3927
DZD	89,649,519	87,899,251	88.22	44.02	73.98%	73.91%	21,546	26,853	1066	87,281	4230
JSCK	89,647,603	87,753,183	87.40	43.64	73.12%	74.68%	20,416	25,724	983	89,086	5555
JSA	89,648,885	87,822,119	89.13	43.69	72.43%	74.23%	20,264	25,542	983	91,659	4705
JSB	89,648,594	88,010,731	88.92	43.91	72.85%	74.63%	20,154	25,425	972	86,901	6013
JSC	89,648,221	87,657,475	87.74	43.70	72.58%	73.31%	19,871	25,011	963	87,767	5261
JSD	89,647,797	87,561,609	87.25	43.69	73.28%	72.93%	20,648	26,003	1051	99,095	6220

DZCK ‘Dongzao’ treated at 4 °C, DZA ‘Dongzao’ treated at −10 °C, DZB ‘Dongzao’ treated at −20 °C, DZC ‘Dongzao’ treated at −30 °C, DZD ‘Dongzao’ treated at −40 °C, JSCK ‘Jinsixiaozao’ treated at 4 °C, JSA ‘Jinsixiaozao’ treated at − 10 °C, JSB ‘Jinsixiaozao’ treated at − 20 °C, JSC ‘Jinsixiaozao’ treated at − 30 °C, JSD ‘Jinsixiaozao’ treated at − 40 °C

ISSN: 1471-2229