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Table 2 The top 15 most represented GO terms of up- and down-regulated genes for the A genome of F1 vs. B. rapa in the biological process category

From: Revealing biomass heterosis in the allodiploid xBrassicoraphanus, a hybrid between Brassica rapa and Raphanus sativus, through integrated transcriptome and metabolites analysis

 

GO

Term

Anno-tated

Sig-nificant

Expe-cted

Fisher

FDR

Level

UP

GO:0044275

Cellular carbohydrate catabolic process

92

25

6.75

6.30E-09

2.89E-05

5

GO:0009251

Glucan catabolic process

65

20

4.77

2.00E-08

4.59E-05

7

GO:0044247

Cellular polysaccharide catabolic process

67

20

4.91

3.60E-08

5.50E-05

6

GO:0003002

Regionalization

247

43

18.11

9.10E-08

9.17E-05

5

GO:0007389

Pattern specification process

292

48

21.41

1.00E-07

9.17E-05

4

GO:0048513

Organ development

1389

152

101.84

2.50E-07

0.000191

4

GO:0009888

Tissue development

727

91

53.3

3.10E-07

0.000203

4

GO:0010065

Primary meristem tissue development

16

9

1.17

4.30E-07

0.000246

5

GO:0016553

Base conversion or substitution editing

13

8

0.95

7.50E-07

0.000335

7

GO:0006073

Cellular glucan metabolic process

313

48

22.95

8.60E-07

0.000335

6

GO:0044042

Glucan metabolic process

313

48

22.95

8.60E-07

0.000335

6

GO:0048731

System development

2528

246

185.34

9.00E-07

0.000335

4

GO:0048508

Embryonic meristem development

48

15

3.52

9.50E-07

0.000335

4

GO:0008283

Cell proliferation

176

32

12.9

1.50E-06

0.000491

3

GO:0007169

Transmembrane receptor protein tyrosine kinase signaling pathway

86

20

6.31

3.00E-06

0.000917

7

DOWN

GO:0006950

Response to stress

4318

714

457.6

< 1E-30

< 1E-30

3

GO:1901700

Response to oxygen-containing compound

2498

473

264.72

< 1E-30

< 1E-30

4

GO:0010200

Response to chitin

213

98

22.57

< 1E-30

< 1E-30

5

GO:0006952

Defense response

1603

336

169.88

< 1E-30

< 1E-30

4

GO:0010243

Response to organo-nitrogen compound

250

103

26.49

< 1E-30

< 1E-30

4

GO:0050896

Response to stimulus

7441

1045

788.56

< 1E-30

< 1E-30

2

GO:0042221

Response to chemical

4025

637

426.55

< 1E-30

< 1E-30

3

GO:1901698

Response to nitrogen compound

351

118

37.2

< 1E-30

< 1E-30

4

GO:0001101

Response to acid chemical

1916

358

203.05

1.50E-29

6.87E-26

4

GO:0009607

Response to biotic stimulus

1248

252

132.26

1.90E-25

4.35E-22

3

GO:0043207

Response to external biotic stimulus

1238

248

131.2

1.60E-24

1.83E-21

4

GO:0051707

Response to other organism

1238

248

131.2

1.60E-24

1.83E-21

3

GO:0010033

Response to organic substance

2991

481

316.97

2.40E-24

2.20E-21

4

GO:0009751

Response to salicylic acid

358

103

37.94

5.70E-22

4.35E-19

5

GO:0006979

Response to oxidative stress

644

146

68.25

1.40E-19

9.16E-17

4