| Pacbio | Varshney et al., 2017 | |
---|---|---|---|
 | Before correct | After correct |  |
Subreads base(G) | 17.89 | Â | Â |
Subreads number | 6,842,837 | Â | Â |
Average subreads length | 2615 | Â | Â |
N50(subreads) | 2787 | Â | Â |
CCS | 354,139 | Â | Â |
5′-primer | 332,357 |  |  |
3′-primer | 332,288 |  |  |
Poly-A | 326,534 | Â | Â |
Full length | 306,369 | Â | Â |
Flnc | 303,627 | Â | Â |
Average flnc read length | 2897 | Â | Â |
Consensus reads | 132,488 | Â | Â |
Total_nucleotides | 409,482,590 | 410,858,545 | Â |
Total_number | 132,488 | 132,488 | Â |
Mean_length | 3091 | 3102 | 1014.71 |
Min_length | 200 | 201 | Â |
Max_length | 14,226 | 14,277 | Â |
N50(consensus) | 3288 | 3302 | Â |
N90(consensus) | 1999 | 2006 | Â |
Number of transcripts | Â | 132,488 | 69,398 |
Number of Genes | Â | 64,878 | 38,579 |
Number of genes annotated | Â | 62,436(96.24%) | 29,344 (76.06%) |
Number of genes unannotated | Â | 2442(3.76%) | 9235 (23.94%) |