Table 2 The top 5 differentially expressed genes in each cultivar/timepoint
Gene ID | Base Mean | log2 Fold Change | Lfc SE | P-value (adjusted) | Cultivar | Timepoint | BLASTx description |
|---|---|---|---|---|---|---|---|
TraesCS4A02G078200.1 | 127.4 | −26.5 | 2.1 | < 0.01 | Stigg | 6 | hypothetical protein OsI_10614 |
TraesCS4D02G268900.1 | 24.2 | −24.9 | 3.1 | < 0.01 | Stigg | 6 | predicted protein |
TraesCS6A02G238300.1 | 54.6 | −30 | 2 | < 0.01 | Stigg | 6 | No blast hit |
TraesCS6B02G361500.1 | 13.3 | −28 | 3 | < 0.01 | Stigg | 6 | No blast hit |
TraesCS7D02G382200.2 | 49.5 | −28.9 | 3.3 | < 0.01 | Stigg | 6 | No blast hit |
TraesCS1D02G180900.1 | 48.8 | 18.6 | 4.2 | < 0.01 | Stigg | 6 | No blast hit |
TraesCS2D02G346900.2 | 42.8 | 19 | 4.2 | < 0.01 | Stigg | 6 | No blast hit |
TraesCS3A02G056800.1 | 28.7 | 18.1 | 3.5 | < 0.01 | Stigg | 6 | No blast hit |
TraesCS5B02G262100.1 | 52.3 | 18.4 | 3.5 | < 0.01 | Stigg | 6 | No blast hit |
TraesCS5D02G009100.1 | 101.6 | 19.4 | 4.2 | < 0.01 | Stigg | 6 | No blast hit |
TraesCS1A02G370600.1 | 45.9 | − 44.9 | 2.8 | < 0.01 | Stigg | 24 | No blast hit |
TraesCS1D02G376500.1 | 20.5 | −44.1 | 2.8 | < 0.01 | Stigg | 24 | No blast hit |
TraesCS2D02G315600.2 | 43.5 | −44 | 4.2 | < 0.01 | Stigg | 24 | esterase AGAP003155 |
TraesCS3B02G238800.7 | 26.2 | −45.8 | 3.6 | < 0.01 | Stigg | 24 | No blast hit |
TraesCS5B02G262100.1 | 52.3 | −45.8 | 3.5 | < 0.01 | Stigg | 24 | No blast hit |
TraesCS1D02G010000.1 | 9.4 | 43.4 | 3.3 | < 0.01 | Stigg | 24 | serine/threonine-protein kinase 19 isoform X1 |
TraesCS3D02G457200.1 | 15.2 | 44.5 | 3.7 | < 0.01 | Stigg | 24 | No blast hit |
TraesCS4D02G063500.1 | 21.8 | 43.6 | 2.9 | < 0.01 | Stigg | 24 | predicted protein |
TraesCS4D02G229200.2 | 19.4 | 46.5 | 3.1 | < 0.01 | Stigg | 24 | triadin-like isoform X2 |
TraesCS5D02G130200.2 | 14.3 | 46.8 | 3.7 | < 0.01 | Stigg | 24 | No blast hit |
TraesCS1A02G378500.1 | 13.8 | 45.6 | 2 | < 0.01 | Stigg | 48 | predicted protein |
TraesCS3B02G565500.1 | 63 | 45.7 | 3.3 | < 0.01 | Stigg | 48 | predicted protein |
TraesCS3D02G418400.6 | 110.7 | 47.2 | 3 | < 0.01 | Stigg | 48 | No blast hit |
TraesCS5D02G235500.1 | 13.2 | 44.9 | 2.4 | < 0.01 | Stigg | 48 | predicted protein |
TraesCS5D02G491700.1 | 16.1 | 44.8 | 2.9 | < 0.01 | Stigg | 48 | No blast hit |
TraesCS2A02G283600.1 | 11.9 | − 43.7 | 5.1 | < 0.01 | Stigg | 48 | No blast hit |
TraesCS2B02G562200.1 | 32.4 | −44.9 | 2.9 | < 0.01 | Stigg | 48 | predicted protein |
TraesCS5D02G091800.1 | 12.4 | −43.1 | 4.4 | < 0.01 | Stigg | 48 | ROTUNDIFOLIA like 8 |
TraesCS5D02G130200.2 | 14.3 | −43.5 | 3.7 | < 0.01 | Stigg | 48 | No blast hit |
TraesCS7D02G135800.3 | 13 | −46.6 | 3.6 | < 0.01 | Stigg | 48 | No blast hit |
TraesCS1D02G010000.1 | 9.4 | 44.8 | 3.3 | < 0.01 | Stigg | 96 | serine/threonine-protein kinase 19 isoform X1 |
TraesCS3D02G298100.1 | 18.4 | 47.2 | 3.7 | < 0.01 | Stigg | 96 | No blast hit |
TraesCS4D02G091100.1 | 9.6 | 44.7 | 5.9 | < 0.01 | Stigg | 96 | hypothetical protein TRIUR3_06363 |
TraesCS5D02G091800.1 | 12.4 | 44.4 | 4.4 | < 0.01 | Stigg | 96 | ROTUNDIFOLIA like 8 |
TraesCS5D02G457200.1 | 18.3 | 44.3 | 4.9 | < 0.01 | Stigg | 96 | No blast hit |
TraesCS2A02G460500.1 | 14.9 | −45.6 | 4.3 | < 0.01 | Stigg | 96 | predicted protein |
TraesCS3A02G056800.1 | 28.7 | − 47.5 | 3.5 | < 0.01 | Stigg | 96 | No blast hit |
TraesCS3A02G395000.2 | 12.8 | −44.2 | 5 | < 0.01 | Stigg | 96 | Transcription factor bHLH128 |
TraesCS3D02G010700.1 | 34.2 | −48.4 | 3.6 | < 0.01 | Stigg | 96 | No blast hit |
TraesCSU02G049500.1 | 17 | −43 | 7.2 | < 0.01 | Stigg | 96 | No blast hit |
TraesCS2A02G283600.1 | 11.9 | 44.6 | 5.1 | < 0.01 | Longbow | 6 | No blast hit |
TraesCS3A02G087800.2 | 23.2 | 44 | 2.9 | < 0.01 | Longbow | 6 | No blast hit |
TraesCS3D02G457200.1 | 15.2 | 44.8 | 3.7 | < 0.01 | Longbow | 6 | No blast hit |
TraesCS4D02G063500.1 | 21.8 | 44.5 | 2.9 | < 0.01 | Longbow | 6 | predicted protein |
TraesCS7B02G425800.1 | 37.9 | 46.3 | 2.7 | < 0.01 | Longbow | 6 | predicted protein |
TraesCS2D02G580700.1 | 2.9 | −42.9 | 2.4 | < 0.01 | Longbow | 6 | No blast hit |
TraesCS3D02G214100.3 | 27.2 | −44.8 | 4.4 | < 0.01 | Longbow | 6 | No blast hit |
TraesCS5D02G130200.2 | 14.3 | −46 | 3.7 | < 0.01 | Longbow | 6 | No blast hit |
TraesCS6A02G321100.1 | 32.1 | −43.8 | 4.1 | < 0.01 | Longbow | 6 | No blast hit |
TraesCSU02G198000.1 | 18 | −45.8 | 3.6 | < 0.01 | Longbow | 6 | Dirigent protein [Source:UniProtKB/TrEMBL;Acc:A0A341ZF53] |
TraesCS2D02G059200.1 | 15.3 | −45.4 | 4.7 | < 0.01 | Longbow | 24 | ribosome production factor 2 homolog |
TraesCS3D02G214100.3 | 27.2 | −46.4 | 4.4 | < 0.01 | Longbow | 24 | No blast hit |
TraesCS4A02G175900.3 | 24.1 | −45 | 4.6 | < 0.01 | Longbow | 24 | Glucan endo-1,3-beta-glucosidase [Source:UniProtKB/Swiss-Prot;Acc:P52409] |
TraesCS4A02G403000.1 | 18.2 | −44.3 | 3.8 | < 0.01 | Longbow | 24 | uncharacterized protein LOC100822466 |
TraesCS6B02G249700.1 | 15.5 | −39.6 | 4.4 | < 0.01 | Longbow | 24 | GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:A0A1D6APT2] |
TraesCS1A02G370600.1 | 45.9 | 47.8 | 2.8 | < 0.01 | Longbow | 24 | No blast hit |
TraesCS1A02G370700.1 | 31.1 | 47.9 | 2.8 | < 0.01 | Longbow | 24 | No blast hit |
TraesCS2D02G315600.2 | 43.5 | 48.2 | 4.2 | < 0.01 | Longbow | 24 | esterase AGAP003155 |
TraesCS5D02G009100.1 | 101.6 | 47.6 | 4.2 | < 0.01 | Longbow | 24 | No blast hit |
TraesCS7A02G201300.1 | 17.7 | 47.5 | 2.8 | < 0.01 | Longbow | 24 | protein TIFY 11e-like |
TraesCS1D02G389200.1 | 27.9 | 43.1 | 3.1 | < 0.01 | Longbow | 48 | predicted protein |
TraesCS3A02G056800.1 | 28.7 | 44.6 | 3.5 | < 0.01 | Longbow | 48 | No blast hit |
TraesCS3B02G565500.1 | 63 | 46.3 | 3.3 | < 0.01 | Longbow | 48 | predicted protein |
TraesCS3D02G010700.1 | 34.2 | 45.8 | 3.6 | < 0.01 | Longbow | 48 | No blast hit |
TraesCS5D02G130200.2 | 14.3 | 43.7 | 3.8 | < 0.01 | Longbow | 48 | No blast hit |
TraesCS2D02G346900.2 | 42.8 | −45 | 4.2 | < 0.01 | Longbow | 48 | No blast hit |
TraesCS3D02G034200.1 | 17.9 | −39.8 | 3.7 | < 0.01 | Longbow | 48 | No blast hit |
TraesCS5B02G262100.1 | 52.3 | −47.6 | 3.5 | < 0.01 | Longbow | 48 | No blast hit |
TraesCS7B02G027400.1 | 7.8 | −36.5 | 6.7 | < 0.01 | Longbow | 48 | F-box protein At5g67140 isoform X1 |
TraesCS7B02G160200.2 | 15.4 | −43.7 | 4.3 | < 0.01 | Longbow | 48 | No blast hit |
TraesCS2D02G059200.1 | 15.3 | 45.9 | 4.7 | < 0.01 | Longbow | 96 | ribosome production factor 2 homolog |
TraesCS4D02G063500.1 | 21.8 | 47.4 | 2.9 | < 0.01 | Longbow | 96 | predicted protein |
TraesCS4D02G091100.1 | 9.6 | 41.3 | 5.9 | < 0.01 | Longbow | 96 | hypothetical protein TRIUR3_06363 |
TraesCS5D02G491700.1 | 16.1 | 45.6 | 2.9 | < 0.01 | Longbow | 96 | No blast hit |
TraesCS6A02G321100.1 | 32.1 | 45.8 | 4.1 | < 0.01 | Longbow | 96 | No blast hit |
TraesCS2B02G495700.2 | 15.5 | −47.1 | 3.6 | < 0.01 | Longbow | 96 | No blast hit |
TraesCS2D02G346900.2 | 42.8 | −48.1 | 4.2 | < 0.01 | Longbow | 96 | No blast hit |
TraesCS3B02G238800.7 | 26.2 | −43.5 | 3.6 | < 0.01 | Longbow | 96 | No blast hit |
TraesCS4A02G175900.3 | 24.1 | −44.7 | 4.6 | < 0.01 | Longbow | 96 | Glucan endo-1,3-beta-glucosidase [Source:UniProtKB/Swiss-Prot;Acc:P52409] |
TraesCSU02G198000.1 | 18 | −43.3 | 3.6 | < 0.01 | Longbow | 96 | Dirigent protein [Source:UniProtKB/TrEMBL;Acc:A0A341ZF53] |