Table 2 Regulated proteins in the high infestation density experiment. N = 4

2 dpi

4 dpi

7 dpi

97

112

105

69

44

25

28

68

80

Functional category

Protein name

Accession Number

Protein code

Photosynthesis

psbP-like protein 1, chloroplastic

XP_016563374.1

1

6.40

−9.36

−14.45

psbP domain-containing protein 6, chloroplastic

XP_016574890.1

2

−9.73

−19.20

− 14.64

oxygen-evolving enhancer protein 3–2, chloroplastic

XP_016560066.1

3

−1.25

−22.55

−22.55

photosystem II reaction center Psb28 protein

XP_016541900.1

4

nc

−20.08

−15.54

photosystem II CP47 chlorophyll apoprotein (chloroplast)

AFP90802.1

5

1.44

2.17

1.43

photosystem II protein D1 (chloroplast)

AFP90756.1

6

1.24

2.16

1.40

chloroplast pigment-binding protein CP26

ACX71300.1

7

1.05

1.26

nc

uncharacterized protein ycf39

XP_016540029.1

8

14.01

15.48

14.40

cytochrome f-like

XP_016559008.1

9

1.22

1.51

1.09

NAD(P)H-quinone oxidoreductase subunit O, chloroplastic

XP_016551962.1

10

−13.10

−13.10

−13.10

photosystem I P700 apoprotein A2 (chloroplast)

AFP90775.1

11

1.97

3.24

2.54

photosystem I P700 apoprotein A1 (chloroplast)

AFP90776.1

12

1.10

1.94

1.41

photosystem I reaction center subunit III, chloroplastic-like

XP_016559311.1

13

1.08

1.49

nc

photosystem I reaction center subunit VI, chloroplastic-like

XP_016562688.1

14

0.99

1.82

nc

photosystem I subunit VII (chloroplast)

AFP90827.1

15

1.46

1.21

nc

ferredoxin, chloroplastic-like

XP_016539055.1

16

−15.49

−20.65

−5.93

ruBisCO large subunit-binding protein subunit alpha

XP_016547312.1

17

nc

nc

−1.22

ruBisCO large subunit-binding protein subunit beta, chloroplastic

XP_016579199.1

18

nc

nc

−1.19

calvin cycle protein CP12–2, chloroplastic

XP_016555606.1

19

−8.54

−19.50

−19.50

geranylgeranyl diphosphate reductase, chloroplastic

XP_016563245.1

20

nc

1.29

nc

magnesium-chelatase subunit ChlI, chloroplastic

XP_016545159.1

21

nc

nc

−1.55

ycf54-like protein

XP_016576775.1

22

nc

−15.36

−15.36

protein CURVATURE THYLAKOID 1B, chloroplastic

XP_016545573.1

23

4.54

−16.26

−11.23

Amino acid metabolism

glutamate--glyoxylate aminotransferase 2

XP_016547661.1

24

1.04

1.35

nc

serine--glyoxylate aminotransferase

XP_016550188.1

25

1.19

1.82

1.98

glycine dehydrogenase (decarboxylating), mitochondrial-like

XP_016550439.1

26

nc

1.13

nc

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

XP_016555027.1

27

1.00

1.05

nc

bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like isoform X1

XP_016569906.1

28

4.62

19.98

nc

putative ketol-acid reductoisomerase

ACF17638.1

29

nc

1.08

nc

LL-diaminopimelate aminotransferase, chloroplastic

XP_016578067.1

30

1.05

1.35

nc

kynurenine formamidase isoform X1

XP_016539519.1

31

−13.70

−18.52

−14.08

putative ferredoxin-dependent glutamate synthase 1

ACF17655.1

32

1.58

2.47

1.86

ACT domain-containing protein ACR11-like

XP_016563012.1

33

nc

nc

−1.25

ACT domain-containing protein ACR12-like isoform X1

XP_016551208.1

34

6.14

−15.72

−15.72

Carbohydrate metabolism

NADP-dependent malic enzyme-like

XP_016543302.1

35

13.51

14.40

18.42

malate dehydrogenase, chloroplastic-like isoform X1

XP_016566422.1

36

nc

−9.35

−18.99

enolase

XP_016542903.1

37

nc

nc

−1.03

fructose-1,6-bisphosphatase, chloroplastic-like

XP_016542325.1

38

1.09

1.71

nc

glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic

XP_016581019.1

39

1.39

nc

nc

glyoxylate/succinic semialdehyde reductase 2, chloroplastic

XP_016562555.1

40

9.50

−9.55

−9.55

Lipid metabolism

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic

XP_016538918.1

41

nc

−19.01

−10.31

zerumbone synthase-like isoform X1

XP_016555539.1

42

nc

nc

−1.10

GDSL esterase/lipase At5g33370-like

XP_016551009.1

43

19.18

14.89

8.94

BAHD acyltransferase DCR

XP_016564555.1

44

14.49

nc

nc

Hormone metabolism

3-ketoacyl-CoA thiolase 2, peroxisomal

XP_016566389.1

45

−3.86

−18.41

−13.73

heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic

XP_016542878.1

46

−4.54

−18.92

−14.44

Transcription

28 kDa ribonucleoprotein, chloroplastic

XP_016566474.1

47

nc

−14.55

−19.44

29 kDa ribonucleoprotein B, chloroplastic-like

XP_016543071.1

48

−5.16

−19.40

−14.99

polyadenylate-binding protein 8-like isoform X1

XP_016539541.1

49

−5.45

−20.62

−10.68

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

XP_016537495.1

50

nc

−5.66

−16.40

putative transcription factor Btf3

ABM55742.1

51

−14.41

−14.41

− 14.41

Translation

30S ribosomal protein S9, chloroplastic

XP_016568673.1

52

17.49

14.04

4.42

30S ribosomal protein S17, chloroplastic

XP_016562689.1

53

−14.19

−14.19

−14.19

40S ribosomal protein S2–3-like

XP_016569631.1

54

14.63

16.56

15.89

50S ribosomal protein L21, chloroplastic

XP_016574877.1

55

−18.84

−18.84

−14.04

60S ribosomal protein L8

XP_016581322.1

56

14.56

5.40

20.82

60S ribosomal protein L11–1-like

XP_016580888.1

57

nc

2.09

1.29

60S ribosomal protein L12

XP_016577833.1

58

nc

−20.87

−20.87

60S acidic ribosomal protein P2-like

XP_016577917.1

59

−15.05

− 15.05

− 15.05

ribosomal protein L16 (chloroplast)

AIA76997.1

60

nc

−4.71

14.59

protein MLP1 homolog

XP_016580206.1

61

2.19

−13.42

nc

elongation factor 1-beta 2-like

XP_016548084.1

62

nc

−20.60

−11.33

ribosome-recycling factor, chloroplastic isoform X1

XP_016542152.1

63

nc

−20.87

−16.49

eukaryotic initiation factor 4A-2

XP_016550226.1

64

1.14

1.08

nc

chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

XP_016578068.1

65

1.18

1.68

0.69

Protein folding and degradation

calnexin homolog 1

XP_016563032.1

66

21.15

4.55

nc

protein GrpE isoform X1

XP_016543595.1

67

19.06

nc

nc

chaperone protein ClpB3, chloroplastic

XP_016561338.1

68

14.52

nc

nc

10 kDa chaperonin-like

XP_016551490.1

69

−14.44

−14.44

−14.44

trigger factor-like protein TIG, Chloroplastic

XP_016581355.1

70

nc

−14.52

− 14.52

protein disulfide-isomerase-like

XP_016575805.1

71

nc

nc

−1.29

leucine aminopeptidase 2, chloroplastic

XP_016540297.1

72

1.53

1.91

nc

presequence protease 1, chloroplastic/mitochondrial-like

XP_016539607.1

73

15.39

19.59

8.84

ATP-dependent zinc metalloprotease FTSH, chloroplastic

XP_016568301.1

74

1.00

nc

nc

proteasome subunit alpha type-4

XP_016560260.1

75

13.31

−4.25

−4.25

proteasome subunit alpha type-5

XP_016559469.1

76

6.46

5.56

−9.61

proteasome subunit alpha type-6

XP_016540329.1

77

−10.53

−20.44

−15.25

Skp1

AAX83944.1

78

14.60

−4.82

−4.82

serine protease inhibitor 5-like

XP_016563917.1

79

nc

13.96

nc

Stress and defence

putative 13-lipoxygenase

ADZ73653.1

80

1.27

1.70

1.15

glutathione S-transferase, partial

ACN60408.1

81

nc

−19.12

nc

uncharacterized monothiol glutaredoxin ycf64-like

XP_016560321.1

82

15.18

nc

nc

thioredoxin

AAR83852.1

83

nc

−15.85

−16.06

peroxidase 12-like

XP_016569419.1

84

13.12

nc

nc

thioredoxin-like protein CDSP32, chloroplastic

XP_016568326.1

85

nc

nc

−1.18

2-Cys peroxiredoxin BAS1, chloroplastic-like

XP_016543590.1

86

nc

nc

−1.11

peroxiredoxin-2E-2, chloroplastic

XP_016543463.1

87

nc

nc

−1.81

peptide methionine sulfoxide reductase A1-like

XP_016564938.1

88

−14.65

−19.45

− 14.86

putative lactoylglutathione lyase isoform X1

XP_016537843.1

89

5.68

−8.60

−13.50

stromal 70 kDa heat shock-related protein, chloroplastic

XP_016538990.1

90

nc

nc

−1.38

heat shock protein 90–5, chloroplastic

XP_016547276.1

91

1.32

nc

nc

hsp70-Hsp90 organizing protein 2-like

XP_016568921.1

92

nc

−19.97

−6.85

kirola

XP_016552266.1

93

1.16

−18.60

−9.15

fatty acid hydroperoxide lyase

AAK27266.1

94

8.53

15.13

19.29

CBS domain-containing protein CBSX3, mitochondrial

XP_016541123.1

95

nc

−13.79

−13.79

peroxisomal (S)-2-hydroxy-acid oxidase GLO1

XP_016552561.1

96

nc

1.40

nc

dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X4

XP_016573540.1

97

9.98

19.29

nc

Cell organization

histone H3-like protein

AAR84425.1

98

6.47

−4.92

16.80

membrane-associated protein VIPP1, chloroplastic

XP_016551679.1

99

nc

−20.56

−20.56

Transport

coatomer subunit gamma

XP_016550178.1

100

20.96

20.04

nc

signal recognition particle 43 kDa protein, chloroplastic

XP_016561463.1

101

13.86

−4.29

−4.29

protein TIC110, chloroplastic

XP_016539169.1

102

nc

−14.53

−14.93

patellin-3-like

XP_016556342.1

103

nc

nc

13.46

Energy production

ATP synthase CF0 subunit I (chloroplast)

AFP90762.1

104

1.11

nc

−1.32

ATP synthase delta chain, chloroplastic

XP_016551634.1

105

nc

−3.13

−4.37

ATP synthase subunit gamma, mitochondrial

XP_016563339.1

106

4.71

−12.97

−12.97

V-type proton ATPase subunit B2

XP_016539985.1

107

nc

nc

−1.10

V-type proton ATPase subunit E

XP_016566244.1

108

5.33

−14.86

−14.86

adenylate kinase 4

XP_016563818.1

109

−5.41

−19.35

−19.35

cytochrome b5-like

XP_016538256.1

110

1.05

−18.07

−9.43

cytochrome b561 and DOMON domain-containing protein At3g25290-like

XP_016541279.1

111

18.11

4.62

nc

Miscellaneous

mitochondrial dicarboxylate/tricarboxylate transporter DTC

XP_016582458.1

112

19.17

20.75

19.83

early nodulin-like protein 2

XP_016541659.1

113

15.05

nc

nc

remorin

XP_016564655.1

114

−13.31

−13.31

−13.31

plasma membrane-associated cation-binding protein 1

XP_016545329.1

115

−14.55

−14.55

− 14.55

uncharacterized protein LOC107845278

XP_016544993.1

116

−13.63

−13.63

− 13.63

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like

XP_016570658.1

117

15.10

16.35

15.71

ferritin-2, chloroplastic-like

XP_016575544.1

118

nc

−15.79

−11.72

bifunctional purple acid phosphatase 26-like

XP_016556756.1

119

nc

18.86

nc

adenine phosphoribosyltransferase 1-like

XP_016568861.1

120

1.64

−19.56

−15.16

haloacid dehalogenase-like hydrolase domain-containing protein At4g39970

XP_016552268.1

121

nc

nc

−1.02

sulfite reductase 1

XP_016554536.1

122

9.56

15.87

15.35

UPF0603 protein At1g54780, chloroplastic

XP_016538515.1

123

1.23

nc

nc

peptidyl-prolyl cis-trans isomerase CYP26–2, chloroplastic-like

XP_016556190.1

124

−5.41

−19.23

−10.14

peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic

XP_016561540.1

125

1.66

nc

nc

photosynthetic NDH subunit of lumenal location 4, chloroplastic

XP_016551803.1

126

15.07

nc

nc

COBW domain-containing protein 1

XP_016562950.1

127

nc

nc

−16.25

nucleoid-associated protein At4g30620, chloroplastic-like

XP_016540291.1

128

−4.84

−19.20

−19.20

thylakoid lumenal 16.5 kDa protein, chloroplastic

XP_016540179.1

129

nc

−20.34

−15.88

calmodulin-7-like

XP_016577941.1

130

5.20

−14.88

−14.88

14–3-3 protein 6-like

XP_016572083.1

131

6.58

−15.54

−15.54

plasminogen activator inhibitor 1 RNA-binding protein-like isoform X1

XP_016570399.1

132

−18.95

−18.95

− 18.95

Unknown function

uncharacterized protein LOC107880062

XP_016582471.1

133

nc

−1.88

−2.54

uncharacterized protein OsI_027940

XP_016556193.1

134

10.11

−9.94

−9.94

uncharacterized protein LOC107850455

XP_016550473.1

135

9.72

−8.92

−8.92

uncharacterized protein LOC107867216

XP_016568855.1

136

−4.84

−19.52

−19.52

uncharacterized protein LOC107874389

XP_016576670.1

137

−18.33

−23.49

−18.19

uncharacterized protein LOC107839055

XP_016537888.1

138

14.98

21.39

19.15

uncharacterized protein LOC107860356

XP_016561166.1

139

−14.18

−14.18

−14.18

uncharacterized protein LOC107873810

XP_016576233.1

140

−17.34

−17.34

− 17.34