Tomato gene ID | Gene ID | Homolog | Log2FC | Protein name | Uniprot description | Effect of psyllid infestation | Citation |
---|---|---|---|---|---|---|---|
Solyc08g083360.2 | PNSB3 | AT3G16250 | -1.23 | photosynthetic NDH subunit of subcomplex B 3, chloroplastic | NDH shuttles electrons from NAD(P)H:plastoquinone to quinones in the photosynthetic chain; Couples the redox reaction to proton translocation | Decreased photosynthetic electron transport | Qian, Haifeng, et al. "PGR5 and NDH pathways in photosynthetic cyclic electron transfer respond differently to sublethal treatment with photosystem-interfering herbicides." Journal of agricultural and food chemistry 62.18 (2014): 4083-4089. |
Solyc01g087690.1 | SIGD | AT5G13730 | -1.06 | RNA polymerase sigma factor sigD, chloroplastic | Promotes the attachment of plastid-encoded RNA polymerase; Regulates transcription of the ndhF gene | Decreased response to light stimulus; Decreased transcription; Decreased regulation of RNA biosynthesis | Lerbs-Mache, Silva. "Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription?." Plant molecular biology 76.3-5 (2011): 235-249. |
Solyc02g085950.2 | RBCS3B | AT5G38410 | -1.03 | Ribulose bisphosphate carboxylase small chain | RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate as well as the oxidative fragmentation of the pentose substrate; Both reactions occur simultaneously and in competition at the same active site | Decarbon fixation; Decreased chloroplast ribulose bisphosphate carboxylase complex assembly; Decreased photorespiration and photosynthesis; Decreaesed response to blue and red light | Menges, Margit, et al. "Cell cycle-regulated gene expression inArabidopsis." Journal of Biological Chemistry 277.44 (2002): 41987-42002. |
Solyc12g036170.1 | PNSB4 | AT1G18730 | -1.03 | photosynthetic NDH subunit of subcomplex B 4, chloroplastic | NDH shuttles electrons from NAD(P)H:plastoquinone to quinones in the photosynthetic chain; Couples the redox reaction to proton translocation | Decreased photosynthetic electron transport | Qian, Haifeng, et al. "PGR5 and NDH pathways in photosynthetic cyclic electron transfer respond differently to sublethal treatment with photosystem-interfering herbicides." Journal of agricultural and food chemistry 62.18 (2014): 4083-4089. |
Solyc11g006020.1 | ndhO | AT1G74880 | -0.93 | NAD(P)H-quinone oxidoreductase subunit O, chloroplastic | NDH shuttles electrons from NAD(P)H:plastoquinone to quinones in the photosynthetic chain; Couples the redox reaction to proton translocation | Decreased NADH dehydrogenase complex assembly; Decreased photosynthesis | Ishikawa, Noriko, Tsuyoshi Endo, and Fumihiko Sato. "Electron transport activities of Arabidopsis thaliana mutants with impaired chloroplastic NAD (P) H dehydrogenase." Journal of plant research 121.5 (2008): 521-526. |
Solyc02g066920.2 | CRR7 | AT5G39210 | -0.84 | protein CHLORORESPIRATORY REDUCTION 7, chloroplastic | Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain; Required for the accumulation of NDH subcomplex A; Involved in post-translational steps during the biogenesis of subcomplex A | Decreased NAD(P)H dehydrogenase complex assembly | Kamruzzaman Munshi, M., Yoshichika Kobayashi, and Toshiharu Shikanai. "Identification of a novel protein, CRR7, required for the stabilization of the chloroplast NAD (P) H dehydrogenase complex in Arabidopsis." The Plant Journal 44.6 (2005): 1036-1044. |
Solyc04g082930.1 | LHCB7 | AT1G76570 | -0.82 | chlorophyll a-b binding protein 7, chloroplastic | Captures and delivers excitation energy; Functions in non-photochemical quenching to dissipate energy; Contributes to primary photochemistry | Decreased photosynthesis and light harvesting in photosystem I; Impaired protein-chromophore linkage; Decreased response to blue and far-red light | Peterson, Richard B., and Neil P. Schultes. "Light-harvesting complex B7 shifts the irradiance response of photosynthetic light-harvesting regulation in leaves of Arabidopsis thaliana." Journal of plant physiology 171.3-4 (2014): 311-318. |
Solyc10g077040.1 | CRD1 | AT3G56940 | -0.80 | magnesium-protoporphyrin monomethyl ester cyclase | Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis; Mediates the cyclase reaction | Decreased chlorophyll biosynthesis; Decreased chloroplast organization; Decreased photosynthesis; Decreased regulation of tetrapyrrole metabolic process | Tottey, Stephen, et al. "Arabidopsis CHL27, located in both envelope and thylakoid membranes, is required for the synthesis of protochlorophyllide." Proceedings of the National Academy of Sciences 100.26 (2003): 16119-16124. |
Solyc06g048410.2 | FSD1 | AT4G25100 | -0.79 | iron superoxide dismutase [Fe] 1, chloroplastic | Breaks down superoxide anion radicals | Decreased response to cadmium stress; Decreased response to copper ion; Decreased response to light intensity; Decreased response to oxidative stress and ozone | Kuo, W. Y., et al. "CHAPERONIN 20 mediates iron superoxide dismutase (Fe SOD) activity independent of its co-chaperonin role in Arabidopsis chloroplasts." New Phytologist 197.1 (2013): 99-110. |
Solyc02g080540.1 | ATPC1 | AT4G04640 | -0.74 | ATP synthase gamma chain, chloroplastic | Produces ATP from ADP in the presence of a proton gradient across the membrane | Decreased ATP biosynthesis; Decreased ATP synthesis coupled proton transport; Decreased photosynthetic electron transport in photosystem II | Dal Bosco, Cristina, et al. "Inactivation of the chloroplast ATP synthase γ subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana." Journal of Biological Chemistry 279.2 (2004): 1060-1069. |
Solyc03g097320.2 | SIGA | AT1G64860 | -0.72 | RNA polymerase sigma factor sigA | Essential protein; Controls the transcription of the psaA gene and thus modulates photosystem stoichiometry; Maintains a harmonious electron flow and photosynthetic efficiency | Decreased response to light stimulus; Decreased cellular response to redox state; Decreased DNA-templated transcription; Impaired photosystem stoichiometry adjustment; Decreased regulation of RNA biosynthesis | Hakimi, Mohamed-Ali, et al. "Evolutionary conservation of C-terminal domains of primary sigma70-type transcription factors between plants and bacteria." Journal of Biological Chemistry 275.13 (2000): 9215-9221. |
Solyc07g032640.1 | PSBO1 | AT5G66570 | -0.66 | oxygen-evolving enhancer protein 1-1, chloroplastic | Stabilizes the manganese cluster which is the primary site of water splitting | Decreased defense response to bacteria; Decreased photoinhibition; Decreased photosynthesis; Decreased photosystem II assembly and stabilization; Decreased regulation of protein dephosphorylation | Murakami, Reiko, et al. "Characterization of an Arabidopsis thaliana mutant with impaired psbO, one of two genes encoding extrinsic 33-kDa proteins in photosystem II." FEBS letters 523.1-3 (2002): 138-142. |
Solyc03g120430.2 | GLYK | AT1G80380 | -0.66 | D-glycerate 3-kinase, chloroplastic | Indispensable ancillary metabolic pathway to the photosynthetic C3 cycle that enables land plants to grow in an oxygen-containing atmosphere | Impaired oxidative photosynthetic carbon pathway; Decreased photorespiration | Boldt, Ralf, et al. "D-GLYCERATE 3-KINASE, the last unknown enzyme in the photorespiratory cycle in Arabidopsis, belongs to a novel kinase family." The Plant Cell 17.8 (2005): 2413-2420. |
Solyc08g080050.2 | PGRL1A | AT4G22890 | -0.64 | PGR5 protein 1A, chloroplastic | Ferredoxin-plastoquinone reductase involved in cyclic electron flow around photosystem I | Decreased photosynthesis; Decreased photosynthetic electron transport in photosystem I | DalCorso, Giovanni, et al. "A complex containing PGRL1 and PGR5 is involved in the switch between linear and cyclic electron flow in Arabidopsis." Cell 132.2 (2008): 273-285. |
Solyc10g007690.2 | LHCA3 | AT1G61520 | -0.62 | Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic | The light-harvesting complex functions as a light receptor; Captures and delivers excitation energy to photosystems with which it is closely associated | Decreased photosynthesis; Impaired protein-chromophore linkage; Decreased response to cold and light stress | Ganeteg, Ulrika, et al. "The properties of the chlorophyll a/b-binding proteins Lhca2 and Lhca3 studied in vivo using antisense inhibition." Plant physiology 127.1 (2001): 150-158. |
Solyc01g005520.2 | MET1 | AT1G55480 | -0.62 | protein MET1, chloroplastic | Involved in photosystem II supercomplex formation and repair | Decreased photosynthesis | Ishikawa, Atsushi, et al. "Molecular characterization of the ZKT gene encoding a protein with PDZ, K-Box, and TPR motifs in Arabidopsis." Bioscience, biotechnology, and biochemistry 69.5 (2005): 972-978. |
Solyc04g064670.2 | PPD4 | AT1G77090 | -0.62 | psbP domain-containing protein 4, chloroplastic | Involved in photosynthesis | Decreased photosynthesis | Dal Bosco, Cristina, et al. "Inactivation of the chloroplast ATP synthase γ subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana." Journal of Biological Chemistry 279.2 (2004): 1060-1069. |
Solyc05g026550.2 | ndhL | AT1G70760 | -0.60 | NAD(P)H-quinone oxidoreductase subunit L, chloroplastic | NDH shuttles electrons from NAD(P)H:plastoquinone to quinones in the photosynthetic chain; Couples the redox reaction to proton translocation | Decreased NADH dehydrogenase complex (plastoquinone) assembly; Decreased photosynthetic electron transport in photosystem I | Thieme, Christoph J., et al. "Endogenous Arabidopsis messenger RNAs transported to distant tissues." Nature Plants 1.4 (2015): 15025. |
Solyc11g008620.1 | PGLP1B | AT5G36790 | -0.56 | phosphoglycolate phosphatase 1B, chloroplastic | Photorespiratory enzyme that dephosphorylates the 2-phosphoglycolate produced by the RuBisCO oxygenation reaction | Decreased dephosphorylation; Decreased photorespiration | Reiland, Sonja, et al. "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks." Plant physiology 150.2 (2009): 889-903. |
Solyc04g057980.2 | ndhH | ATCG01110 | -0.56 | NAD(P)H-quinone oxidoreductase subunit H, chloroplastic | NDH shuttles electrons from NAD(P)H:plastoquinone to quinones in the photosynthetic chain; Couples the redox reaction to proton translocation | Decreased photosynthesis; Decreased reaction to light | Lerbs-Mache, Silva. "Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription?." Plant molecular biology 76.3-5 (2011): 235-249. |
Solyc02g091560.2 | SHM1 | AT4G37930 | -0.53 | serine hydroxymethyltransferase 1, mitochondrial | Catalyzes interconversion of serine and glycine in the photorespiratory pathway; Involved in controlling cell damage caused by abiotic stress; Regulates the hypersensitive defense response | Decreased response to tetrahydrofolate; Decreased L-serine metabolism; Decreased one-carbon metabolism; Decreased photorespiration; Decreased hypersensitive response; Decreased response to cadmium, cold, heat, and light stress | Moreno, Juan Ignacio, et al. "Arabidopsis SHMT1, a serine hydroxymethyltransferase that functions in the photorespiratory pathway influences resistance to biotic and abiotic stress." The Plant Journal 41.3 (2005): 451-463. |
Solyc05g052600.2 | N/a | AT3G55800 | -0.50 | sedoheptulose-1,7-bisphosphatase, chloroplastic | Involved in fructose 1,6-biphosphate metabolism | Decreased defense response to bacteria; Decreased gluconeogenesis; Impaired reductive pentose-phosphate cycle; Decreased photosynthesis | Kiddle, Guy, et al. "Effects of leaf ascorbate content on defense and photosynthesis gene expression in Arabidopsis thaliana." Antioxidants and Redox Signaling 5.1 (2003): 23-32. |
Solyc01g107660.2 | SEP1 | AT4G34190 | -0.47 | stress enhanced protein 1 protein | Involved in non-photochemical quenching; Plays a role in the thylakoid membrane in response to light stress | Decreased response to high light intensity; Decreased photosynthesis; Decreased response to wounding | Maejima, Kensaku, et al. "Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen." Plant signaling & behavior 10.8 (2015): e1042635. |
Solyc10g080080.1 | NTRC | AT2G41680 | -0.46 | NADPH-dependent thioredoxin reductase 3 | Electron donor for plastidial 2-Cys peroxiredoxin; Required for chlorophyll biosynthesis and biogenesis of the photosynthetic apparatus; Regulates starch biosynthesis by redox activation of the ADP-glucose pyrophosphorylase | Impaired cell redox homeostasis; Decreased hydrogen peroxide catabolic process; Decreased regulation of chlorophyll biosynthesis; Decreased regulation of starch biosynthesis; Decreased removal of superoxide radicals | Moon, Jeong Chan, et al. "The C-type Arabidopsis thioredoxin reductase ANTR-C acts as an electron donor to 2-Cys peroxiredoxins in chloroplasts." Biochemical and biophysical research communications 348.2 (2006): 478-484. |
Solyc02g072140.1 | GIL1 | AT5G58960 | -0.44 | protein GRAVITROPIC IN THE LIGHT 1 | Required for red and far-red light-induced and phytochrome-mediated deregulation of negative gravitropism leading to randomization of hypocotyl growth orientation | Impaired gravitropism; Decreased response to red or far red light | Allen, Trudie, et al. "Phytochrome-mediated agravitropism in Arabidopsis hypocotyls requires GIL1 and confers a fitness advantage." The Plant Journal 46.4 (2006): 641-648. |
Solyc11g008990.1 | VIPP1 | AT1G65260 | -0.36 | membrane-associated protein VIPP1, chloroplastic | Required for plastid vesicle formation and thylakoid membrane biogenesis | Decreased thylakoid membrane organization; Decreased vesicle organization | Kroll, Daniela, et al. "VIPP1, a nuclear gene of Arabidopsis thaliana essential for thylakoid membrane formation." Proceedings of the National Academy of Sciences 98.7 (2001): 4238-4242. |
Solyc05g014310.2 | HHL1 | AT1G67700 | -0.34 | protein HHL1, chloroplastic | Involved in photoprotection; Forms a complex with LQY1 that is involved in the repair and reassembly cycle of the PSII-LHCII supercomplex under high-light conditions | Increased response to light stress | Jin, Honglei, et al. "HYPERSENSITIVE TO HIGH LIGHT1 interacts with LOW QUANTUM YIELD OF PHOTOSYSTEM II1 and functions in protection of photosystem II from photodamage in Arabidopsis." The Plant Cell 26.3 (2014): 1213-1229. |
Solyc05g050680.1 | CKB4 | AT2G44680 | 0.28 | casein kinase II subunit beta-4 | Regulates the basal catalytic activity of the alpha subunit; Involved in the proteasome-dependent degradation of PIF1 and promotion of photomorphogenesis; Participates in the regulation of the initiation of translation | Improved circadian rhythm; Improved photoperiodism, Increased flowering | Dennis, Michael D., and Karen S. Browning. "Differential phosphorylation of plant translation initiation factors by Arabidopsis thaliana CK2 holoenzymes." Journal of Biological Chemistry 284.31 (2009): 20602-20614. |
Solyc02g091410.2 | DEGP7 | AT3G03380 | 0.29 | protease Do 7 | Serine protease | Increased photoinhibition | Sun, Xuwu, et al. "The stromal chloroplast Deg7 protease participates in the repair of photosystem II after photoinhibition in Arabidopsis." Plant physiology 152.3 (2010): 1263-1273. |
Solyc05g055470.2 | NAC078 | AT5G04410 | 0.29 | NAC domain-containing protein 78 | Transcriptional activated by transmembrane proteolysis; Induces flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress | Increased transcription; Increased regulation of flavonoid biosynthesis; Increased response to high light intensity | Morishita, Teruyuki, et al. "Arabidopsis NAC transcription factor, ANAC078, regulates flavonoid biosynthesis under high-light." Plant and Cell Physiology 50.12 (2009): 2210-2222. |
Solyc08g076100.2 | BZIP16 | AT2G35530 | 0.33 | bZIP transcription factor 16 | Transcriptional activator; G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes | Increased transcription; Increased intercellular signaling; Increased photosynthesis; Increased plant growth | Shen, Huaishun, et al. "AtbZIP16 and AtbZIP68, two new members of GBFs, can interact with other G group bZIPs in Arabidopsis thaliana." BMB reports 41.2 (2008): 132-138. |
Solyc11g017300.1 | CSN5A | AT1G22920 | 0.33 | COP9 signalosome complex subunit 5a | Involved in photomorphogenesis and response to jasmonate; Essential regulator of the ubiquitin conjugation pathway; Involved in repression of photomorphogenesis in darkness; Required for degradation of PSIAA6 | Decreased photomorphogenesis; Increased cellular turnover; Increased protein deneddylation; Increased red light phototransduction; Increased defense response; Increased response to auxin; Increased floral organ development | Kwok, Shing F., et al. "Arabidopsis homologs of a c-Jun coactivator are present both in monomeric form and in the COP9 complex, and their abundance is differentially affected by the pleiotropic cop/det/fus mutations." The Plant Cell 10.11 (1998): 1779-1790. |
Solyc08g007270.2 | HAT4 | AT4G16780 | 0.34 | homeobox-leucine zipper protein HAT4 | Negative regulator of cell elongation and specific cell proliferation processes ; Mediator of the red light response under light stress; Negatively regulates its own expression | Increased lateral root formation; Increased red light phototransduction; Increased response to auxin; Increased response to cytokinin; Increased secondary thickening; Increased shade avoidance | Schena, Mark, Alan M. Lloyd, and Ronald W. Davis. "The HAT4 gene of Arabidopsis encodes a developmental regulator." Genes & development 7.3 (1993): 367-379. |
Solyc04g082810.2 | AHL27 | AT1G20900 | 0.35 | AT-hook motif nuclear-localized protein 27 | Negatively regulates innate immunity to pathogens through the down-regulation of PAMP-triggered FRK1 expression; Regulates flowering and hypocotyl elongation; Chromatin remodeling factor that negatively regulates leaf senescence | Increased chromatin organization; Increased flower development; Impaired innate immune response; Increased leaf senescence; Increased photomorphogenesis; Increased vegetative to reproductive phase transition of meristem | Lim, Pyung Ok, et al. "Overexpression of a chromatin architecture-controlling AT-hook protein extends leaf longevity and increases the post-harvest storage life of plants." The Plant Journal 52.6 (2007): 1140-1153. |
Solyc12g026400.1 | DEGP9 | AT5G40200 | 0.41 | protease Do 9 | Serine protease that degrades the two-component response regulator ARR4; Acts upstream of ARR4 and regulates the activity of ARR4 in cytokinin and light-signaling pathways; Mediates the cross-talk between light and cytokinin signaling | Increased photosynthesis | Chi, Wei, et al. "DEG9, a serine protease, modulates cytokinin and light signaling by regulating the level of ARABIDOPSIS RESPONSE REGULATOR 4." Proceedings of the National Academy of Sciences 113.25 (2016): E3568-E3576. |