Tomato gene ID | Gene ID | Homolog | Log2FC | Protein name | Uniprot description | Effect of psyllid infestation | Citation |
---|---|---|---|---|---|---|---|
Solyc06g073260.2 | CSP41B | AT1G09340 | -0.81 | chloroplast stem-loop binding protein of 41 kDa b, chloroplastic | Associates with pre-ribosomal particles in chloroplasts and participates in chloroplast ribosomal RNA metabolism; Required for chloroplast integrity and embryo development; Regulates the circadian system; Regulates heteroglycans and monosaccharide mobilization | Impaired chloroplast organization; Impaired circadian rhythm; Decreased defense response to bacteria and wounding; Decreased galactose catabolism; Decreased monosaccharide metabolism; Decreased transcription and translation; Decreased response to cold and drought; Decreased rRNA processing | Raab, Sabine, et al. "ABA-responsive RNA-binding proteins are involved in chloroplast and stromule function in Arabidopsis seedlings." Planta 224.4 (2006): 900-914. |
Solyc11g042940.1 | XK1 | AT2G21370 | -0.53 | D-ribulose kinase precursor | Can phosphorylate D-ribulose with low efficiency | Decreased phosphorylation | Xie, Yuan, et al. "Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana." PloS one 11.5 (2016): e0156067. |
Solyc02g069010.2 | IMPL1 | AT1G31190 | -0.39 | phosphatase IMPL1, chloroplastic | Phosphatase acting preferentially on D-myoinositol 1-phosphate | Decreased inositol biosynthesis; Decreased signal transduction | Torabinejad, Javad, et al. "VTC4 is a bifunctional enzyme that affects myoinositol and ascorbate biosynthesis in plants." Plant physiology 150.2 (2009): 951-961. |
Solyc04g080860.1 | LON2 | AT5G47040 | -0.37 | lon protease 2 | Mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix; Necessary for type 2 peroxisome targeting signal-containing protein processing | Decreased lateral root development; Decreased protein transport; Decreased protein processing; Decreased protein quality control for misfolded or incompletely synthesized proteins; Decreased protein targeting to peroxisome | Lingard, Matthew J., and Bonnie Bartel. "Arabidopsis LON2 is necessary for peroxisomal function and sustained matrix protein import." Plant physiology 151.3 (2009): 1354-1365. |
Solyc05g006990.2 | NPF4.6 | AT1G69850 | -0.29 | protein NRT1/ PTR FAMILY 4.6 | Low-affinity proton-dependent nitrate transporter; Involved in constitutive nitrate uptake; Involved in (+)-abscisic acid (ABA) transport; Mediates cellular ABA uptake | Decreased abscisic acid transport; Decreased nitrate assimilation; Decreased regulation of stomatal movement; Decreased response to nematode | Huang, Nien-Chen, et al. "Cloning and functional characterization of an Arabidopsis nitrate transporter gene that encodes a constitutive component of low-affinity uptake." The Plant Cell 11.8 (1999): 1381-1392. |
Solyc01g109520.2 | RABG3F | AT3G18820 | 0.25 | ras-related protein RABG3f | Essential for trafficking from prevacuolar compartments; Essential for plant growth; Participates in the recruitment of the core retromer components to the endosomal membrane | Increased intracellular protein transport; Increased late endosome to vacuole transport; Increased Rab protein signal transduction; Increased vacuole organization | Zelazny, Enric, et al. "Mechanisms governing the endosomal membrane recruitment of the core retromer in Arabidopsis." Journal of Biological Chemistry 288.13 (2013): 8815-8825. |
Solyc09g074680.2 | CUL1 | AT4G02570 | 0.25 | cullin-1 | Involved in ubiquitination and subsequent proteasomal degradation; Regulator of mitotic processes during gametogenesis and embryogenesis; Involved in floral organ development; Involved in auxin signaling; Regulates responses to jasmonates; Involved in phytochrome A light signaling; Involved in leaf senescence | Increased auxin-activated signaling pathway; Increased cellular cycling; Increased embryo development; Increased jasmonic acid-mediated signaling; Increased phloem or xylem histogenesis; Increased protein ubiquitination; Disrupted circadian rhythm; Increased response to jasmonic acid; Increased protein catabolism | Feng, Suhua, et al. "Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein degradation." The Plant Cell 16.7 (2004): 1870-1882. |
Solyc03g034200.2 | RCF3 | AT5G53060 | 0.26 | RNA-binding KH domain-containing protein RCF3 | Negative regulator of osmotic stress-induced gene expression; Regulates thermotolerance responses under heat stress; Forms a complex with CPL1 that modulates co-transcriptional processes; Represses stress-inducible gene expression; Involved in primary miRNA processing and pre-miRNA biogenesis; Involved in JA-mediated fungal defense | Increased heat acclimation; Increased jasmonic acid-mediated signaling; Increased mRNA processing; Increased miRNA processing; Increased regulation of defense response to fungus; Increased regulation of gene expression; Increased response to osmotic stress; Increased RNA splicing | Xiong, Liming, et al. "HOS5–a negative regulator of osmotic stress-induced gene expression in Arabidopsis thaliana." The Plant Journal 19.5 (1999): 569-578. |
Solyc12g095990.1 | TIF4A-2 | AT1G54270 | 0.26 | eukaryotic initiation factor 4A-2 | Subunit of the eIF4F complex involved in cap recognition; Required for mRNA binding to ribosome; Unwinds RNA secondary structures in the 5'-UTR of mRNAs; Necessary for efficient binding of the small ribosomal subunit | Increased cytoplasmic translational initiation; Increased response to cadmium ion | Vergnolle, Chantal, et al. "The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions." Plant physiology 139.3 (2005): 1217-1233. |
Solyc12g089150.1 | SYP61 | AT1G28490 | 0.26 | syntaxin-61 | Vesicle trafficking protein that functions in the secretory pathway; Involved in osmotic stress tolerance and in abscisic acid regulation of stomatal responses | Increased abscisic acid-activated signaling; Increased Golgi vesicle transport; Increased intracellular protein transport; Increased vesicle docking and fusion | Shahriari, Mojgan, et al. "The AAA-type ATPase AtSKD1 contributes to vacuolar maintenance of Arabidopsis thaliana." The Plant Journal 64.1 (2010): 71-85. |
Solyc05g055600.2 | VPS33 | AT3G54860 | 0.27 | vacuolar protein-sorting-associated protein 33 homolog | Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment | Increased vesicle docking involved in exocytosis | Rojo, Enrique, et al. "The AtC–VPS protein complex is localized to the tonoplast and the prevacuolar compartment in Arabidopsis." Molecular biology of the cell 14.2 (2003): 361-369. |
Solyc08g065890.2 | EPSIN1 | AT5G11710 | 0.28 | clathrin interactor EPSIN 1 | Plays a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes; Stimulates clathrin assembly; Plays a role in the vacuolar trafficking of soluble cargo proteins at the trans-Golgi network | Increased protein targeting to vacuole | Song, Jinhee, et al. "Arabidopsis EPSIN1 plays an important role in vacuolar trafficking of soluble cargo proteins in plant cells via interactions with clathrin, AP-1, VTI11, and VSR1." The Plant Cell 18.9 (2006): 2258-2274. |
Solyc01g096290.2 | RPL40A | AT2G36170 | 0.28 | ubiquitin-60S ribosomal protein L40 | Involved in protein degradation via the proteasome; Linear polymer chains formed via attachment by the initiator Met-lead during cellular signaling | Increased modification-dependent protein catabolism; Increased protein ubiquitination; Increased translation; Increased defense response to bacteria | Ditt, Renata F., et al. "The Arabidopsis thaliana transcriptome in response to Agrobacteria tumefaciens." Molecular plant-microbe interactions 19.6 (2006): 665-681. |
Solyc08g007360.2 | MAG5 | AT5G47480 | 0.28 | protein transport protein SEC16A homolog | Required for efficient protein export from the endoplasmic reticulum to the Golgi; Functions as a scaffold and regulator of COPII coat assembly at ER exit sites | Increased COPII vesicle coating; Increased endoplasmic reticulum organization; Increased protein transport | Takagi, Junpei, et al. "MAIGO5 functions in protein export from Golgi-associated endoplasmic reticulum exit sites in Arabidopsis." The Plant Cell 25.11 (2013): 4658-4675. |
Solyc04g082560.2 | ITSN2 | N/a | 0.29 | intersectin-2 | Adapter protein that provides indirect link between the endocytic membrane traffic and the actin assembly machinery; Regulates formation of clathrin-coated vesicles; Involved in endocytosis of integrin beta-1 | Increased endocytosis; Increased dendrite extension; Increased regulation of Rho protein signal transduction; Increased viral process | Mettlen, Marcel, et al. "Endocytic accessory proteins are functionally distinguished by their differential effects on the maturation of clathrin-coated pits." Molecular biology of the cell 20.14 (2009): 3251-3260. |
Solyc03g034180.2 | GRF2 | AT1G78300 | 0.31 | 14-3-3-like protein GF14 omega | Associated with a DNA binding complex that binds to the G box | Increased brassinosteroid-mediated signaling | DeLille, Justin M.,et al. "The Arabidopsis 14-3-3 family of signaling regulators." Plant Physiology 126.1 (2001): 35-38. |
Solyc05g053830.2 | N/a | AT4G14160 | 0.31 | protein transport protein SEC23 | Promotes the formation of transport vesicles from the endoplasmic reticulum | Increased COPII-coated vesicle cargo loading; Increased intracellular protein transport | De Craene, Johan-Owen, et al. "Study of the plant COPII vesicle coat subunits by functional complementation of yeast Saccharomyces cerevisiae mutants." PLoS One 9.2 (2014): e90072. |
Solyc01g104970.2 | BAK1 | AT4G33430 | 0.31 | brassinosteroid insensitive 1-associated receptor kinase 1 | Involved in brassinosteroid signaling response to beacteria/fungi/oomycetes; Mediates programmed cell death | Increased brassinosteroid mediated signaling pathway; Increased programmed cell death; Increased defense response to bacteria/fungus/oomycetes | Li, Jia, et al. "BAK1, an Arabidopsis LRR receptor-like protein kinase, interacts with BRI1 and modulates brassinosteroid signaling." Cell 110.2 (2002): 213-222. |
Solyc11g013260.1 | PHB3 | AT5G40770 | 0.32 | prohibitin-3, mitochondrial | Holdase/unfoldase involved in the stabilization of newly synthesized mitochondrial proteins; Necessary for mitochondrial and cell metabolism and biogenesis; Required to regulate ethylene-mediated signaling; Involved in growth maintenance; Functions in nitric oxide-mediated responses | Increased cellular turnover; Increased defense response to bacteria; Increased lateral root development; Increased mitochondrion organization; Increased response to auxin, ethylene, and nitric oxide; Increased to salt stress; Increased salicylic acid biosynthesis | Christians, Matthew J., et al. "Mutational loss of the prohibitin AtPHB3 results in an extreme constitutive ethylene response phenotype coupled with partial loss of ethylene-inducible gene expression in Arabidopsis seedlings." Journal of experimental botany 58.8 (2007): 2237-2248. |
Solyc09g061340.1 | PCMP-E76 | AT2G13600 | 0.33 | pentatricopeptide repeat-containing protein At2g13600 | Involved in mitochondrial mRNA modification during sugar metabolism | Increased mitochondrial mRNA modification; Increased RNA modification; Increased sugar-mediated signaling pathway; Increased sugar metabolism | Zhu, Qiang, et al. "SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism." The Plant Journal 71.5 (2012): 836-849. |
Solyc08g076100.2 | BZIP16 | AT2G35530 | 0.33 | bZIP transcription factor 16 | Transcriptional activator; G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control | Increased transcription; Increased intercellular signaling; increased photosynthesis; Increased plant growth | Shen, Huaishun, et al. "AtbZIP16 and AtbZIP68, two new members of GBFs, can interact with other G group bZIPs in Arabidopsis thaliana." BMB reports 41.2 (2008): 132-138. |
Solyc11g010950.1 | ELP4 | AT3G11220 | 0.33 | elongator complex protein 4 | Component of the RNA polymerase II elongator complex; Promotes organs development by modulating cell division rate; Regulates mechanisms producing carbon or importing sucrose; Involved in the repression of the abscisic acid signaling during seed germination; Required for auxin distribution or signaling; Prevents anthocyanins accumulation | Increased response to sucrose; Decreased anthocyanin metabolism; Increased cellular turnover; Increased auxin-mediated signaling; Increased regulation of carbon utilization; Increased regulation of leaf development; Increased response to oxidative stress; Increased tRNA wobble uridine modification | Nelissen, Hilde, et al. "The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth." Proceedings of the National Academy of Sciences 102.21 (2005): 7754-7759. |
Solyc11g033270.1 | M3KE1 | AT3G13530 | 0.34 | MAP3K epsilon protein kinase | Serine/threonine-protein kinase involved in the spatial and temporal organization of cortical activity; Required for the normal functioning of the plasma membrane in developing pollen; Involved in the regulation of cell expansion, cell elongation, and embryo development | Increased cell division; Increased regulation of embryonic development; Increased regulation of cell growth; Increased signal transduction by protein phosphorylation | Seguí-Simarro, José M., et al. "Mitogen-activated protein kinases are developmentally regulated during stress-induced microspore embryogenesis in Brassica napus L." Histochemistry and cell biology 123.4-5 (2005): 541-551. |
Solyc01g096350.2 | CRK3 | AT2G46700 | 0.34 | CDPK-related kinase 3 | Plays a role in signal transduction pathways that involve calcium as a second messenger; Serine/threonine kinase that phosphorylates histone H3 an GLN1-1 | Increased response to abscisic acid stimulus; Increased intracellular signal transduction; Increased leaf senescence; Increased peptidyl-serine phosphorylation | Du, Wei, et al. "Biochemical and expression analysis of an Arabidopsis calcium-dependent protein kinase-related kinase." Plant science 168.5 (2005): 1181-1192. |
Solyc05g052510.2 | CHC1 | AT3G11130 | 0.34 | clathrin heavy chain 1 | Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Mediates endocytosis and is required for a correct polar distribution of PIN auxin transporters | Increased clathrin-dependent endocytosis; Increased intracellular protein transport; Increased receptor-mediated endocytosis; Increased stomatal movement | Kitakura, Saeko, et al. "Clathrin mediates endocytosis and polar distribution of PIN auxin transporters in Arabidopsis." The Plant Cell 23.5 (2011): 1920-1931. |
Solyc02g030210.2 | N/a | AT2G41710 | 0.36 | AP2 ethylene-responsive transcription factor At2g41710 | Acts as a transcriptional activator; Binds to the GCC-box pathogenesis-related promoter element; Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways | Increased ethylene-activated signaling pathway; Increased growth/development of reproductive tissues | Seki, Motoaki, et al. "Functional annotation of a full-length Arabidopsis cDNA collection." Science 296.5565 (2002): 141-145. |
Solyc02g069310.2 | NPR3 | AT5G45110 | 0.36 | regulatory protein NPR3 | Substrate-specific adapter of an E3 ubiquitin-protein ligase complex; Mediates protein ubiquitination and subsequent proteasomal degradation; Regulates basal defense responses against pathogens | Increased defense response to bacteria and fungus; Increased protein ubiquitination; Increased jasmonic acid-mediated signaling; Increased systemic acquired resistance | Zhang, Yuelin, et al. "Negative regulation of defense responses in Arabidopsis by two NPR1 paralogs." The Plant Journal 48.5 (2006): 647-656. |
Solyc05g021100.2 | SWAP70 | AT2G30880 | 0.36 | switch-associated protein 70 | Involved in intracellular signal transduction; Mediates defense response to bacteria | Increased defense response to bacteria; Increased intracellular signal transduction | Van Leeuwen, Wessel, et al. "Learning the lipid language of plant signalling." Trends in plant science 9.8 (2004): 378-384. |
Solyc01g089900.2 | ALG12 | AT1G02145 | 0.39 | dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase | Required for N-linked oligosaccharide assembly; Adds the eighth mannose residue in an alpha-1,6 linkage onto the dolichol-PP-oligosaccharide precursor dolichol-PP-Man7GlcNAc2 | Increased dolichol-linked oligosaccharide biosynthesis; Increased N-linked glycosylation; Increased ERAD signaling | Hong, Zhi, et al. "Mutations of an α1, 6 mannosyltransferase inhibit endoplasmic reticulum–associated degradation of defective brassinosteroid receptors in Arabidopsis." The Plant Cell 21.12 (2009): 3792-3802. |
Solyc10g074570.1 | CPK4 | AT4G09570 | 0.39 | calcium-dependent protein kinase 4 | Plays a role in signal transduction pathways that involve calcium as a second messenger; Regulator of the calcium-mediated abscisic acid signaling pathway | Increased intracellular signal transduction; Increased peptidyl-serine phosphorylation; Increased abscisic acid-activated signaling; Increased protein autophosphorylation | Rodriguez Milla, Miguel A., et al. "A novel yeast two-hybrid approach to identify CDPK substrates: Characterization of the interaction between AtCPK11 and AtDi19, a nuclear zinc finger protein1." FEBS letters 580.3 (2006): 904-911. |
Solyc12g099010.1 | GFS12 | AT5G18525 | 0.40 | protein GFS12 | Acts predominantly to suppress BCHC1, which itself is a negative factor in protein storage vacuole trafficking regulation and plant effector triggered immunity | Increased defense response to bacteria; Increased protein targeting to vacuoles | Teh, Ooi-kock, et al. "BEACH-domain proteins act together in a cascade to mediate vacuolar protein trafficking and disease resistance in Arabidopsis." Molecular plant 8.3 (2015): 389-398. |
Solyc08g005270.2 | RCD1 | AT1G32230 | 0.41 | inactive poly [ADP-ribose] polymerase RCD1 | Regulates hormonal responses during developmental; Required for embryogenesis, vegetative and reproductive development, and abiotic stress responses | Increased defense response to bacteria; Increased embryo development; Increased ethylene-activated signaling pathway; Increased jasmonic acid-mediated signaling; Increased lateral root morphogenesis; Increased nitric oxide biosynthesis; Increased programmed cell death; Increased response to drought, osmotic, ozone, and oxide stress | Ahlfors, Reetta, et al. "Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein–protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses." The Plant Cell 16.7 (2004): 1925-1937. |
Solyc03g025940.1 | N/a | AT3G48880 | 0.42 | F-box/LRR-repeat protein | Involved in endogenous messenger response to Gram-negative bacteria | Increased RNA signaling; Increased defense response to Gram-negative bacteria | Thieme, Christoph J., et al. "Endogenous Arabidopsis messenger RNAs transported to distant tissues." Nature Plants 1.4 (2015): 15025. |
Solyc06g083510.2 | PBL25 | AT3G24790 | 0.44 | serine/threonine-protein kinase PBL25 | Involved in protein phosphorylation signaling during germination and plant defense | Increased defense response; Increased protein phosphorylation; Increased reproduction | Wang, Yi, et al. "Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis." Plant physiology 148.3 (2008): 1201-1211. |
Solyc01g100720.2 | IMPA4 | AT1G09270 | 0.45 | importin subunit alpha-4 | Mediates nuclear protein import across the nuclear envelope; Cellular receptor for the nuclear import of the virD2 protein of Agrobacteria | Increased defense response to symbiont of tumor, nodule or growth; Increased NLS-bearing protein transport into nucleus; Increased symbiont intracellular transport | Bhattacharjee, Saikat, et al. "IMPa-4, an Arabidopsis importin α isoform, is preferentially involved in Agrobacteria-mediated plant transformation." The Plant Cell 20.10 (2008): 2661-2680. |
Solyc10g085000.1 | BSK5 | AT5G59010 | 0.55 | serine/threonine-protein kinase BSK5 | Positive regulator of brassinosteroid signaling; Involved in abiotic stress tolerance; Required for abscisic acid-mediated response to drought and salt stress | Increased brassinosteroid-mediated signaling; Increased response to abscisic acid; Increased response to cold; Increased response to salt stress | Tang, Wenqiang, et al. "BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis." Science 321.5888 (2008): 557-560. |
Solyc09g008460.2 | RABC2A | AT5G03530 | 0.60 | ras-related protein RABC2a | Involved in intracellular vesicle trafficking and protein transport | Increased intracellular protein transport; Increased Rab protein signal transduction | Hashimoto, Kohsuke, et al. "An isoform of Arabidopsis myosin XI interacts with small GTPases in its C-terminal tail region." Journal of experimental botany 59.13 (2008): 3523-3531. |
Solyc05g012210.2 | AFP3 | AT3G29575 | 0.76 | ninja-family protein AFP3 | Acts as a negative regulator of abscisic acid response and stress responses | Decreased transcription; Increased signal transduction | de Torres-Zabala, Marta, et al. "Pseudomonas syringae pv. tomato hijacks the Arabidopsis abscisic acid signalling pathway to cause disease." The EMBO journal 26.5 (2007): 1434-1443. |