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Table 1 Overlaps between the rapeseed imprinted genes and those of Arabidopsis, rice, castor bean, maize, and other Brassicas

From: Genomic imprinted genes in reciprocal hybrid endosperm of Brassica napus

 

Query

Subject

Identity

Mapping length

Mismatch

Gap

E value

Arabidopsis

BnaA01g15540D

AT4G26420

76.47

652

90

6

0

BnaA03g27380D

AT3G01640

90.29

264

95

3

1.00E-110

BnaA03g42520D

AT4G16380

75.67

248

20

1

6.00E-148

BnaA04g19750D

AT2G33770

81.26

122

59

1

2.00E-36

BnaA05g08350D

AT2G35670

46.67

744

264

9

0

BnaA05g27940D

AT3G11000

56

547

42

3

0

BnaA06g05440D

AT1G09540

65.96

290

23

1

0

BnaA07g33830D

AT1G77960

38.12

669

308

10

7.00E-178

BnaA08g26320D

AT1G09540

83.15

629

47

3

0

BnaA09g01980D

AT3G27300

92.25

580

49

2

0

BnaA10g22530D

AT5G64260

78.43

306

30

1

5.00E-162

BnaC05g48510D

AT3G02110

90.7

473

32

2

0

BnaC07g22140D

AT2G03210

86

313

33

0

0

BnaC09g20470D

AT2G01300

82.05

422

30

1

0

BnaCnng40210D

AT3G16720

68.52

578

191

9

0

B. rapa

BnaA01g08850D

Bra013274

85.08

496

46

2

0

BnaA04g19090D

Bra005543

57.7

461

84

2

2E-123

BnaA05g08350D

Bra005316

50.26

191

14

4

4E-47

BnaA05g08770D

Bra005362

59.74

688

201

1

0

BnaA06g05440D

Bra020016

84.77

243

14

0

2E-108

BnaA06g37970D

Bra019964

87.5

392

22

1

0

BnaA08g26320D

Bra020016

82.34

368

24

3

2E-151

BnaA09g13800D

Bra027091

65.84

363

17

5

3E-109

BnaAnng03730D

Bra036061

82.27

141

8

1

7E-62

BnaC02g44940D

Bra007859

78.81

387

32

3

0

Rice

BnaA06g38220D

LOC_Os03g01320.1

76.19

84

20

0

7E-39

BnaA09g13800D

LOC_Os07g37620.1

49.03

155

63

5

7E-33

Castor bean

BnaA06g34330D

29,780.m001362

68.1

232

45

3

5E-109

BnaC05g09100D

29,792.m000624

50.21

482

234

5

2E-174

BnaA08g21920D

30,170.m014165

46.04

556

210

17

3E-108

BnaC04g34200D

29,905.m000439

39.93

278

149

7

3E-50

BnaC07g36310D

27,837.m000165

66.43

143

48

0

1E-42

Maize

BnaA06g38220D

GRMZM2G379898

74.12

85

22

0

4E-38

BnaA04g15380D

GRMZM2G445602

70.26

548

142

5

0

BnaA08g16960D

GRMZM2G108032

56.93

476

199

3

0

B. napus(Rapeseed lines YN171 and 93275)

BnaA02g15580D

BnA02g0069250

99.02

509

5

0

0

BnaA02g34950D

BnA02g0050760

99.42

344

2

0

0

BnaA03g24210D

BnA09g0353510

93.07

231

15

1

1E-156

BnaA03g31730D

BnC03g0579390

85.71

385

53

1

0

BnaA03g48600D

BnA03g0151360

100

173

0

0

4E-125

BnaA04g24790D

BnA04g0183470

99.03

516

5

0

0

BnaA06g07630D

BnA06g0231270

98.8

502

6

0

0

BnaA06g26050D

BnA06g0253460

100

405

0

0

0

BnaA07g18120D

BnA03g0127550

99.61

507

2

0

0

BnaA07g33830D

BnA07g0301490

100

204

0

0

2E-149

BnaA08g06260D

BnA08g0311780

99.68

317

1

0

0

BnaA08g25430D

BnA08g0332430

97.99

398

8

0

0

BnaA08g26320D

BnA08g0333300

97.4

346

8

1

0

BnaA08g29710D

BnA08g0311890

98.42

506

8

0

0

BnaA09g31650D

BnA09g0368910

99.7

337

1

0

0

BnaA10g23330D

BnA10g0420100

98.83

511

2

1

0

BnaA10g23660D

BnA10g0419770

99.67

307

1

0

0

BnaAnng03730D

BnA09g0368240

98.77

162

2

0

3E-113

BnaAnng03940D

BnA09g0368020

98.41

504

7

1

0

BnaC03g33640D

BnC05g0703810

100

141

0

0

1E-97

BnaC04g00750D

BnC04g0620020

100

254

0

0

0

BnaC08g34600D

BnC08g0874770

100

242

0

0

5E-156

BnaC08g35220D

BnC08g0875510

98.91

275

3

0

0

BnaC09g20470D

BnUnng1014900

93.46

153

7

1

2E-99

BnaC09g54550D

BnC09g0927560

100

322

0

0

0