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Table 3 Marker parameters calculated for each SSR type based on 52 primer pairs

From: Transcriptomic resources for prairie grass (Bromus catharticus): expressed transcripts, tissue-specific genes, and identification and validation of EST-SSR markers

SSR type NP ANF APF PP (%) PIC Rp MI
Repeat types Di- 5 3.20 3.00 95.00% 0.153 0.58 0.45
Tri- 18 3.22 2.89 89.35% 0.225 1.06 0.64
Tetra- 29 3.17 2.90 92.41% 0.290 1.29 0.73
Number of repeats 10 1 5.00 5.00 100.00% 0.168 1.00 0.84
9 1 3.00 3.00 100.00% 0.192 0.67 0.58
8 2 3.00 2.50 87.50% 0.126 0.46 0.27
7 6 3.33 3.33 100.00% 0.238 1.29 0.86
6 15 3.27 2.87 87.22% 0.232 1.06 0.62
5 27 3.07 2.78 91.85% 0.285 1.23 0.69
Total 52 3.19 2.90 91.60% 0.254 1.14 0.67
  1. NP Number of primer pairs, ANF Average number of fragments, APF Average number of polymorphic fragments, PP Percent of polymorphic fragments, PIC Polymorphic information content, Rp Resolving power, MI Marker index