From: Genome-wide association study and its applications in the non-model crop Sesamum indicum
Number of accessions | Sources of accessions | Number of effective SNPs | SNPs detection approach | Average marker density/SNP | Average nucleotide diversity of the panel | Genetic distance | Average gene diversity | Number of subgroups identified | References |
---|---|---|---|---|---|---|---|---|---|
95 | Mediterranean sesame core collection (21 geographical regions) | 5,292 | ddRAD | 46SNP/kb | NA | 0.023 to 0.524 | 0.28 | Â | [119] |
366 | HSRC-HAAS | 89,924 | SLAF-seq | 1SNP/2.6kb | 1.1×10-3 | 0.01 to 0.42 | 0.17 | 3 | [122] |
705 | China gene bank | 254,781 | Whole-genome sequencing | 1SNP/50bp | 2.4×10-4 | 0.02 |  | 2 | [15] |
29 | China gene bank | 127,347 | Whole-genome sequencing | NA | 1.5 × 10-4 | NA | NA | NA | [14] |