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Table 4 Summary of SNP marker based genetic diversity and population structure analysis in sesame

From: Genome-wide association study and its applications in the non-model crop Sesamum indicum

Number of accessions

Sources of accessions

Number of effective SNPs

SNPs detection approach

Average marker density/SNP

Average nucleotide diversity of the panel

Genetic distance

Average gene diversity

Number of subgroups identified

References

95

Mediterranean sesame core collection (21 geographical regions)

5,292

ddRAD

46SNP/kb

NA

0.023 to 0.524

0.28

 

[119]

366

HSRC-HAAS

89,924

SLAF-seq

1SNP/2.6kb

1.1×10-3

0.01 to 0.42

0.17

3

[122]

705

China gene bank

254,781

Whole-genome sequencing

1SNP/50bp

2.4×10-4

0.02

 

2

[15]

29

China gene bank

127,347

Whole-genome sequencing

NA

1.5 × 10-4

NA

NA

NA

[14]