Table 7 Summary of significant SNPs associated with root length and seed coat color within the linkage groups (LG) identified by each model during GWAS in sesame
From: Genome-wide association study and its applications in the non-model crop Sesamum indicum
Trait | LG | GWAS models | ||
|---|---|---|---|---|
mrMLM FASTmrEMMA | mrMLM | Emmax | ||
Root length | LG1 | 167 | 163 | 162 |
LG4 | 7 | 6 | 0 | |
LG5 | 7 | 3 | 0 | |
LG7 | 1 | 1 | 1 | |
LG10 | 5 | 5 | 0 | |
LG15 | 3 | 3 | 0 | |
Total | 190 | 181 | 163 | |
Seed coat color | LG1 | 0 | 4 | 0 |
LG4 | 0 | 0 | 0 | |
LG6 | 67 | 89 | 142 | |
LG7 | 0 | 1 | 1 | |
LG12 | 0 | 349 | 0 | |
LG16 | 0 | 48 | 0 | |
Total | 67 | 491 | 143 | |