Table 3 Significant SNP for crown root traits detected by at least two models
From: Exploiting natural variation in crown root traits via genome-wide association studies in maize
Trait | QTL | ENV | SNP | Method | LOD | Previous QTL |
|---|---|---|---|---|---|---|
CRA | Q1 | 2016SY | SNP_1_56897538 | mrEMMA; mrMLM | 6.96 | Â |
| Â | Q2 | 2015SY | SNP_1_285593212 | mrEMMA; mrMLM | 4.58 | Â |
| Â | Q3 | 2016SY | SNP_1_292661954 | MrEMMA; mrMLM; GLM | 5.49 | Â |
| Â | Q4 | 2015SY | SNP_4_26119510 | mrMLM; GLM | 5.19 | Â |
| Â | Q5 | 2017SY; BLUP | SNP_4_229202306 | mrMLM | 5.19 | Â |
| Â | Q6 | BLUP | SNP_5_32046071 | mrEMMA; mrMLM | 4.96 | Â |
| Â | Q7 | 2016SY; BLUP | SNP_7_16560558 | GLM | 6.21 | Â |
| Â | Q8 | 2016SY; BLUP | SNP_7_99321370 | MLM; GLM | 8.08 | Â |
| Â | Q9 | BLUP | SNP_7_103362548 | mrMLM; GLM | 5.68 | Â |
| Â | Q10 | 2016SY; BLUP | SNP_7_103953346 | mrEMMA; GLM | 5.24 | Â |
| Â | Q11 | BLUP | SNP_7_104570406 | mrEMMA; mrMLM; GLM | 6.61 | Â |
| Â | Q12 | 2017SY; BLUP | SNP_10_117747965 | mrMLM | 6.24 | Â |
CRD | Q13 | 2015SY | SNP_1_177406418 | mrEMMA; mrMLM | 4.92 | Â |
| Â | Q14 | BLUP | SNP_1_227741904 | mrEMMA; mrMLM | 6.49 | Â |
| Â | Q15 | 2016SY; BLUP | SNP_3_191323638 | GLM; FarmCPU | 7.33 | Â |
| Â | Q16 | 2016SY; BLUP | SNP_5_156094190 | GLM | 6.15 | Â |
| Â | Q17 | 2016SY; BLUP | SNP_5_158203765 | mrEMMA; mrMLM; GLM | 18.24 | Â |
| Â | Q18 | 2015SY; BLUP | SNP_5_166452989 | mrEMMA; GLM | 5.86 | Â |
| Â | Q19 | 2016SY | SNP_6_112539707 | mrEMMA; mrMLM; GLM | 11.19 | 15CRD6; avCRD6 |
| Â | Q20 | 2017SY; BLUP | SNP_7_173609433 | mrMLM | 4.12 | Â |
| Â | Q21 | 2016SY; 2017SY | SNP_8_28739061 | mrMLM | 7.14 | avCRD8 |
| Â | Q22 | 2016SY; BLUP | SNP_10_125502748 | mrMLM | 5.93 | Â |
CRN | Q23 | 2015SY | SNP_4_10804837 | mrEMMA; GLM | 5.28 | 17CRN4 |
| Â | Q24 | BLUP | SNP_4_52541037 | mrEMMA; mrMLM | 4.41 | Â |
| Â | Q25 | 2016SY | SNP_4_87583019 | mrEMMA; mrMLM | 5.61 | Â |
| Â | Q26 | 2016SY | SNP_4_175786824 | mrMLM; MLM; GLM | 6.46 | Â |
| Â | Q27 | 2016SY; BLUP | SNP_4_181565381 | GLM | 5.84 | Â |
| Â | Q28 | 2016SY | SNP_4_207569283 | mrEMMA; mrMLM | 6.14 | Â |
| Â | Q29 | 2016SY; BLUP | SNP_4_235330942 | mrEMMA; mrMLM; GLM; FarmCPU | 9.11 | Â |
| Â | Q30 | BLUP | SNP_5_1829751 | mrEMMA; mrMLM | 6.65 | Â |
| Â | Q31 | BLUP | SNP_6_81133730 | mrMLM; GLM | 5.71 | Â |
| Â | Q32 | 2016SY | SNP_6_140298004 | mrMLM; GLM | 6.35 | Â |
| Â | Q33 | 2016SY; 2017SY; BLUP | SNP_6_145084885 | mrEMMA; mrMLM; GLM | 7.31 | Â |
| Â | Q34 | 2017SY | SNP_7_175781987 | mrEMMA; mrMLM | 6.20 | Â |
| Â | Q35 | 2016SY | SNP_8_104966220 | mrMLM; GLM | 8.75 | Â |
| Â | Q36 | 2016SY | SNP_9_84205355 | mrEMMA; mrMLM | 6.63 | Â |
| Â | Q37 | 2017SY; BLUP | SNP_10_4729497 | mrEMMA; mrMLM | 5.09 | Â |
| Â | Q38 | 2016SY; BLUP | SNP_10_9143425 | mrMLM; GLM | 5.31 | Â |