Table 5 Summary of candidate genes for detected QTL in apple genome GDDH13 and result of the blast to genome of other pear species
From: Genome-wide association study of individual sugar content in fruit of Japanese pear (Pyrus spp.)
|  |  |  |  |  | BLAST to genome of European pear (P. communis L. ‘Bartlett’) | BLAST to genome of wild pear in China (P. betulaefolia) | ||||
|---|---|---|---|---|---|---|---|---|---|---|
SNP | Trait | Candidate gene in GDDH13 | ID | Position of candidate gene in GDDH13 | Position | Identity (%) | Bit　score | Position | Identity (%) | Bit score |
Chr07_33139082 | SUC,FRU,GLC | Acid invertase, MdoVIN2 | MDP0000377084 | Chr7:32184887 | Chr7:23975117 | 93.9 | 1893 | Chr7:24394889 | 94.0 | 1892 |
| Â | SUC | Sucrose synthase 4 | MD15G1223500 | Chr15:18156590 | Chr15:14168216 | 96.3 | 3561 | Chr15:14346485 | 96.2 | 3544 |
| Â | FRU | Sucrose synthase 4 | MD15G1223500 | Chr15:18156590 | Chr15:14346485 | 96.3 | 3561 | Chr15:14346485 | 96.2 | 3544 |
Chr04_29871378 | FRU | ERD6-like gene | MD04G1211000 | Chr4:29523287 | Chr4:20641984 | 93.7 | 1404 | Chr4:25696155 | 95.1 | 1467 |
Chr11_41197041 | FRU, GLC | A tandem repeat of ERD6-like genes | MD11G1293100 | Chr11:41256007 | Chr11:28621080 | 95.4 | 4401 | Chr11:33736771 | 95.8 | 4455 |
| Â | Â | A tandem repeat of ERD6-like genes | MD11G1293200 | Chr11:41260335 | Chr11:28626231 | 95.7 | 5312 | Chr11:33741882 | 95.2 | 5230 |
| Â | Â | A tandem repeat of ERD6-like genes | MD11G1293300 | Chr11:41264834 | Chr11:28631364 | 94.9 | 616 | Chr11:33746689 | 94.9 | 614 |
| Â | Â | A tandem repeat of ERD6-like genes | MD11G1293400 | Chr11:41270166 | Chr11:28638653 | 95.4 | 5738 | Chr11:33757627 | 95.9 | 3607 |
Chr03_31587739 | HarT | NAC18.1 transcription factor | MD03G1222600 | Chr3:30696191 | Chr3:18264874 | 96.6 | 1616 | Chr3:25257554 | 96.8 | 1626 |
Chr15_16568005 | HarT | ACS gene family | MD15G1203500 | Chr15:16180415 | Chr15:12799631 | 96.9 | 1882 | Chr15:12917853 | 95.0 | 1773 |
Chr16_3043313 | Aci | Aluminum-activated malate transporter-like gene, ma1 | MDP0000252114 | Chr16:3176495 | Chr16:2447780 | 95.9 | 2486 | Chr16:2478566 | 96.1 | 2512 |