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Table 1 Phenotype comparison between normal and Cd stress conditions

From: Loci and natural alleles for cadmium-mediated growth responses revealed by a genome wide association study and transcriptome analysis in rice

Traits

Full population

Indica

N

G

G/N

P-value

N

G

G/N

P-value

SRL (cm)

495.4

286.3

0.60

6.62E-42

515.9

300.6

0.60

5.22E-21

RA (cm2)

16.28

9.13

0.59

2.50E-41

17.17

9.51

0.57

6.75E-21

SA (cm2)

48.55

27.01

0.59

7.51E-41

51.24

28.07

0.57

6.34E-21

RV (cm3)

0.502

0.256

0.55

2.28E-36

0.531

0.259

0.52

7.14E-21

RD (mm)

0.287

0.287

1.01

8.79E-01

0.287

0.280

0.98

5.78E-02

MRL (cm)

20.80

17.76

0.86

2.30E-17

20.42

17.36

0.86

1.19E-09

SL (cm)

37.16

25.08

0.68

5.35E-50

37.08

25.76

0.70

2.05E-18

SW (g)

0.173

0.113

0.69

1.37E-21

0.186

0.119

0.66

4.16E-11

RW (g)

0.044

0.025

0.61

1.32E-29

0.047

0.063

0.57

6.73E-01

Traits

Temperate japonica

Tropical japonica

N

G

G/N

P-value

N

G

G/N

P-value

SRL (cm)

527.9

296.9

0.60

2.23E-15

435.0

243.5

0.58

1.31E-07

RA (cm2)

17.12

9.57

0.60

6.74E-15

14.53

7.90

0.56

2.35E-07

SA (cm2)

51.09

28.39

0.59

1.43E-14

43.29

23.40

0.56

3.07E-07

RV (cm3)

0.530

0.277

0.58

1.21E-11

0.463

0.229

0.52

1.58E-06

RD (mm)

0.290

0.293

1.02

6.30E-01

0.291

0.296

1.02

6.21E-01

MRL (cm)

21.19

18.29

0.87

2.24E-06

22.29

18.29

0.83

2.49E-03

SL (cm)

38.20

25.12

0.67

2.63E-20

37.22

24.44

0.66

3.48E-09

SW (g)

0.178

0.116

0.71

9.74E-09

0.150

0.098

0.71

4.16E-04

RW (g)

0.047

0.027

0.62

3.66E-10

0.038

0.023

0.65

2.50E-04

  1. N normal conditions, G Cd stress conditions, G/N the ratio of the value under Cd stress conditions versus the value under normal conditions. Significant differences between normal and Cd stress conditions were analyzed by Student’s t test in R