Table 3 An overview of the characteristics of PHAS loci identified using PHAS tank
From: Identification of Brassica napus small RNAs responsive to infection by a necrotrophic pathogen
PHAS locus ID | Length | Phased ratio | Phased abundance | Phased number | Phased score | Triggering miRNAa | Description of BLAST hit | Differential expression |
|---|---|---|---|---|---|---|---|---|
chrCnn_random_466 | 791 | 0.398 | 3845 | 16 | 52.538 | Â | Uncharacterized | Â |
chrA04_130 | 917 | 0.448 | 274 | 19 | 47.821 | miR4995, miR6035 | chloroplast | Â |
chrC01_614 | 331 | 0.568 | 3417 | 7 | 32.332 | Â | Uncharacterized | Upregulated |
chrA03_random_16 | 434 | 0.6 | 630 | 8 | 30.96 | Â | Disease resistance protein | Upregulated |
chrA01_443 | 245 | 0.79 | 877 | 5 | 26.769 | miR390 | non coding RNA | Downregulated |
chrUnn_random_22 | 621 | 0.468 | 159 | 11 | 26.078 | Â | chloroplast | Â |
chrC09_754 | 621 | 0.468 | 159 | 11 | 26.078 | Â | chloroplast | Â |
chrA01_random_47 | 245 | 0.769 | 877 | 5 | 26.05 | Â | non coding RNA | Downregulated |
chrA07_478 | 287 | 0.621 | 823 | 6 | 25.004 | Â | metal tolerance protein | Â |
chrA01_532 | 371 | 0.666 | 111 | 7 | 21.953 | Â | Disease resistance protein | Upregulated |
chrC09_1169 | 392 | 0.747 | 1217 | 4 | 21.216 | miR838 | Uncharacterized | Â |
chrA02_413 | 455 | 0.381 | 2189 | 7 | 20.533 | Â | Uncharacterized | Â |
chrAnn_random_753 | 308 | 0.531 | 547 | 6 | 20.073 | miR390 | non coding RNA | Â |
chrA09_223 | 476 | 0.314 | 579 | 10 | 19.96 | miR1885 | Disease resistance proteinb | Â |
chrC05_811 | 392 | 0.393 | 559 | 8 | 19.894 | miR838 | non coding RNA | Â |
chrA01_533 | 329 | 0.746 | 288 | 4 | 16.888 | Â | Disease resistance protein | Upregulated |
chrC02_807 | 371 | 0.668 | 109 | 5 | 15.662 | Â | Disease resistance protein | Â |
chrAnn_random_716 | 413 | 0.7 | 182 | 4 | 14.562 | Â | Uncharacterized | Â |
chrA10_253 | 329 | 0.376 | 198 | 7 | 13.935 | Â | Photosystem II protein D1 | Upregulated |
chrC01_385 | 266 | 0.444 | 237 | 5 | 12.145 | Â | non coding RNA | Â |
chrC09_1045 | 266 | 0.4 | 152 | 5 | 10.041 | Â | COP9 signalosome complex subunit | Downregulated |
chrC09_1044 | 434 | 0.373 | 788 | 4 | 9.949 | Â | Pentatricopeptide repeat | Â |
chrCnn_random_695 | 391 | 0.35 | 234 | 5 | 9.558 | Â | Uncharacterized | Â |
chrA04_52 | 413 | 0.359 | 206 | 5 | 9.558 | Â | Uncharacterized | Â |
chrC08_352 | 392 | 0.46 | 118 | 4 | 8.772 | Â | Uncharacterized | Downregulated |
chrC07_411 | 350 | 0.305 | 175 | 4 | 6.294 | Â | Uncharacterized | Â |