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Fig. 5 | BMC Plant Biology

Fig. 5

From: Regulation of wound ethylene biosynthesis by NAC transcription factors in kiwifruit

Fig. 5

Phylogenetic analysis of putative NAC transcription factors from kiwifruit. (A) The 147 putative NAC TFs identified in the A. chinensis ‘Red5’ genome (see Supplemental Table S2) were initially aligned using Geneious MUSCLE alignment tool, then manually curated. The DNA binding site was extracted and realigned using Muscle. Phyml [59] was used to construct the tree shown using the JTT (Jones, Taylor & Thornton) substitution method with default calculation parameters and was rooted with Acc22424.1 and Acc22425.1 as outgroup. (B) A UPGMA consensus tree of kiwifruit (Ac) and tomato (Solyc) NAC TFs (complete ORFs). The tree was generated using 1000 replicates (Jukes-Cantor distance matrix). Only branches with over 50% support threshold are displayed. Solyc10g55760 is used as outgroup

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