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Table 2 The significantly agronomic traits-associated markers and the putative genes concerned with the agronomic traits

From: Identification of genetic loci associated with major agronomic traits of wheat (Triticum aestivum L.) based on genome-wide association analysis

Gene ID

Annotation

Associated SNP

SNP position on chromosome

P-value

Alleles

MAF

Winter survival rate

 TraesCS2D01G032800

GroES-like zinc-binding alcohol dehydrogenase family protein

RAC875_c38003_164

2D:13007354

0.0008

G/A

0.21724

 TraesCS4A01G469900

Homeobox BEL1-like protein

Kukri_c18677_237

4A:731352373

0.0008

A/G

0.36738

 TraesCS5A01G359900

Phosphatase 2C family protein

RAC875_c23340_2243

5A:561565292

0.0008

A/G

0.3723

 TraesCS5A01G360000

Low temperature and salt responsive protein

RAC875_c23340_2243

5A:561565292

0.0008

A/G

0.3723

 TraesCS5A01G391700

Vrn-A1

IAAV3043

5A:586537895

0.0003

A/C

0.08451

 TraesCS5A01G394900

UDP-glucose 6-dehydrogenase

BobWhite_c471_2245

5A:588454245

0.0002

A/G

0.44624

 TraesCS5B01G397500

ABC transporter B family protein

BS00065936_51

5B:574848793

0.0002

A/G

0.16135

 TraesCS5B01G454100

Protein kinase family protein

wsnp_Ku_rep_c102339_89347150

5B:626668012

0.0003

A/G

0.12121

 

wsnp_Ex_c53426_56666788

5B:626666488

0.0007

G/A

0.15548

 TraesCS7A01G389900

Extracellular ligand-gated ion channel protein

BS00024617_51

7A:566002702

0.0001

A/G

0.21715

 TraesCS7D01G357200

Transmembrane protein, putative

Ra_c51831_507

7D:460532222

6.71E-08

G/A

0.0669

Days to heading

 TraesCS2D01G468900

Starch synthase family protein

CAP11_c1070_54

2D:577071973

0.0002

G/A

0.42179

 TraesCS6D01G212200

Phenylalanine ammonia-lyase

RAC875_c26887_562

6D:300325843

0.0009

G/A

0.09666

 TraesCS7A01G484300

Receptor-like kinase

wsnp_Ku_c42539_50247597

7A:675380487

0.0002

C/A

0.08772

Days to maturity

 TraesCS4B01G129300

Exostosin family protein

RAC875_c35152_372

4B:168404351

0.0009

A/G

0.11228

 TraesCS4B01G225800

Proline-rich protein

Kukri_c5502_2513

4B:534190263

0.0009

A/C

0.31317

 TraesCS4B01G226000

Proline-rich protein

Kukri_c5502_2513

4B:534190263

0.0009

A/C

0.31317

 TraesCS5B01G356300

UTP--glucose-1-phosphate uridylyltransferase

RAC875_c30584_75

5B:536161912

0.0004

C/A

0.41472

 TraesCS6A01G117600

Homeobox protein

wsnp_BG262421A_Ta_2_2

6A:87936718

0.0009

G/A

0.15114

 TraesCS6A01G406900

F-box family protein

RAC875_c14887_829

6A:612287507

0.0002

G/A

0.19965

 TraesCS6A01G407000

F-box family protein

RAC875_c14887_829

6A:612287507

0.0002

G/A

0.19965

 TraesCS6A01G407500

F-box family protein

RAC875_c14887_829

6A:612287507

0.0002

G/A

0.19965

 TraesCS6A01G407600

F-box family protein

RAC875_c14887_829

6A:612287507

0.0002

G/A

0.19965

Stem length

 TraesCS4B01G052400

MYB transcription factor

Excalibur_c36630_2194

4B:41020506

0.0007

G/A

0.20285

 TraesCS5A01G320500

Myb factor

Tdurum_contig30483_167

5A:533701309

0.0004

A/G

0.49734

Spike length

 TraesCS2D01G036800

Cullin-associated NEDD8-dissociated protein 1

BS00062567_51

2D:13994909

0.0008

A/G

0.14312

Awn length

 TraesCS2D01G064400

F-box family protein

Tdurum_contig42153_6232

2D:27609458

0.0009

G/A

0.08673

Number of seeds per spike

 TraesCS2B01G087000

Response regulator 1

BS00067781_51

2B:48944396

0.0006

C/A

0.21617

 TraesCS3A01G311000

Cytokinin oxidase/dehydrogenase

RFL_Contig2616_1422

3A:549908041

0.0001

G/A

0.05944

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BMC Plant Biology

ISSN: 1471-2229

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