Table 4 Recognition success index based on the program TaxonDNA
From: Developing an efficient DNA barcoding system to differentiate between Lilium species
Region | Best match | Best Close match | All species barcodes | ||||||
|---|---|---|---|---|---|---|---|---|---|
Correct(%) | Ambiguous(%) | Incorrect(%) | Correct(%) | Ambiguous(%) | Incorrect(%) | Correct(%) | Ambiguous(%) | Incorrect(%) | |
ITS+trnP-psaJ-rpI33+psbB-psbH | 12.33 | 12.5 | 79.16 | 12.33 | 10.41 | 79.16 | 8.08 | 95.83 | 0 |
ITS+trnP-psaJ-rpI33 | 10.41 | 10.41 | 79.16 | 10.41 | 10.41 | 75 | 4.16 | 89.58 | 2.08 |
ITS | 9.09 | 40.9 | 50 | 9.09 | 31.81 | 34.08 | 0 | 75 | 0 |
ITS+psbB-psbH | 8.33 | 37.5 | 54.16 | 8.33 | 37.5 | 52.08 | 2.08 | 93.75 | 2.08 |
trnP-psaJ-rpI33+matK | 8.33 | 27.08 | 64.58 | 8.33 | 27.08 | 60.41 | 0 | 95.83 | 0 |
ITS+psbB-psbH+ycf1b | 8.33 | 8.33 | 83.33 | 8.33 | 6.25 | 83.33 | 4.16 | 93.75 | 0 |
ITS+trnP-psaJ-rpI34+psbB-psbH+ycf1b | 8.33 | 2.08 | 89.58 | 8.33 | 0 | 89.58 | 4.16 | 91.66 | 2.08 |
trnP-psaJ-rpI33+psbB-psbH+ycf1b+matK | 8.33 | 2.08 | 89.58 | 8.33 | 0 | 89.58 | 4.16 | 91.66 | 2.08 |
ITS+ycf1b | 8.16 | 28.57 | 63.26 | 8.16 | 26.52 | 59.18 | 8.16 | 85.71 | 0 |
ITS+matK | 6.25 | 22.91 | 70.83 | 6.25 | 20.83 | 70.83 | 0 | 97.91 | 0 |
ycf1b | 6.25 | 66.66 | 27.08 | 6.25 | 64.58 | 27.08 | 6.25 | 79.16 | 12.5 |
matK | 6.25 | 50 | 43.75 | 6.25 | 47.91 | 43.75 | 0 | 97.91 | 0 |
trnP-psaJ-rpI33+ycf1b | 6.25 | 45.83 | 47.91 | 6.25 | 43.75 | 47.91 | 6.25 | 87.5 | 4.16 |
psbB-psbH+ycf1b | 6.25 | 45.83 | 47.91 | 6.25 | 43.75 | 47.91 | 2.08 | 93.75 | 2.08 |
psbB-psbH+matK | 6.25 | 37.5 | 56.25 | 6.25 | 37.5 | 52.08 | 0 | 95.83 | 0 |
ITS+psbB-psbH+ycf1b+matK | 6.25 | 6.25 | 87.5 | 6.25 | 6.25 | 81.25 | 0 | 93.75 | 0 |
ITS+ycf1b+matK | 6.12 | 10.2 | 83.67 | 6.12 | 10.2 | 79.59 | 0 | 95.91 | 0 |
ITS+trnP-psaJ-rpI34+psbB-psbH+ycf1b+matK | 6.12 | 4.08 | 89.79 | 6.12 | 4.08 | 87.75 | 0 | 95.91 | 2.04 |
ycf1b+matK | 4.16 | 35.41 | 60.41 | 4.16 | 35.41 | 54.16 | 0 | 91.66 | 3.08 |
trnP-psaJ-rpI33 | 4.16 | 56.25 | 39.58 | 4.16 | 56.25 | 39.58 | 8.33 | 83.33 | 8.33 |
trnP-psaJ-rpI33+psbB-psbH | 4.16 | 58.33 | 37.5 | 4.16 | 56.25 | 37.5 | 2.08 | 93.75 | 2.08 |
psbB-psbH+ycf1b+matK | 4.16 | 18.75 | 77.08 | 4.16 | 18.75 | 70.83 | 0 | 91.66 | 2.08 |
trnP-psaJ-rpI33+psbB-psbH+ycf1b | 0 | 39.58 | 60.41 | 0 | 37.5 | 60.41 | 0 | 95.83 | 2.08 |
psbB-psbH | 0 | 81.25 | 18.75 | 0 | 81.25 | 16.66 | 0 | 95.83 | 2.08 |