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Table 1 Summary of KEGG pathway functional annotations under cold stress treatment

From: Transcriptome and de novo analysis of Rosa xanthina f. spontanea in response to cold stress

Pathway

ID code

4 °C vs. 23 °C

−20 °C vs. 23 °C

Total number of DEGs

Up

Down

P Value

Total number of DEGs

Up

Down

P Value

Starch and sucrose metabolism

ko00500

221

37

184

1.36E-08

75

22

53

0.036091

Photosynthesis - antenna proteins

ko00196

21

18

3

0.005443

12

11

1

0.002156

Circadian rhythm - plant

ko04712

48

31

17

0.016043

37

22

15

3.92E-08

Plant-pathogen interaction

ko04626

274

103

171

0.017747

176

42

134

6.66E-16

Glycerolipid metabolism

ko00561

57

22

35

0.025967

29

12

17

0.004703

Nitrogen metabolism

ko00910

26

7

19

0.027501

15

0

15

0.003943

Anthocyanin biosynthesis

ko00942

12

4

8

0.040398

9

3

6

0.001390

Flavonoid biosynthesis

ko00941

28

5

23

0.045727

20

7

13

0.000119

Zeatin biosynthesis

ko00908

20

4

16

0.045810

14

8

6

0.000760

Fatty acid elongation

ko00062

28

4

24

0.002586

Carotenoid biosynthesis

ko00906

32

13

19

0.003827

Phenylpropanoid biosynthesis

ko00940

84

28

56

0.004435

Base excision repair

ko03410

30

6

24

0.006088

Ribosome biogenesis in eukaryotes

ko03008

75

25

50

0.014468

Ascorbate and aldarate metabolism

ko00053

49

13

36

0.025578

Riboflavin metabolism

ko00740

9

1

8

0.028072

Plant hormone signal transduction

ko04075

102

38

64

4.96E-07

Amino sugar and nucleotide sugar metabolism

Ko00520

60

14

46

0.000918

Cutin, suberine and wax biosynthesis

Ko00073

14

5

9

0.001240

Caffeine metabolism

ko00232

6

3

3

0.010312

Stilbenoid, diarylheptanoid and gingerol biosynthesis

ko00945

13

5

8

0.015090

Monoterpenoid biosynthesis

ko00902

7

5

2

0.018729

Tryptophan metabolism

ko00380

17

11

6

0.029553

Isoquinoline alkaloid biosynthesis

ko00950

13

3

10

0.036862

Tropane, piperidine and pyridine alkaloid biosynthesis

ko00960

11

4

7

0.038950

Brassinosteroid biosynthesis

ko00905

9

2

7

0.039466

Sesquiterpenoid and triterpenoid biosynthesis

ko00909

8

1

7

0.049619

Total

1014

321

693

 

647

218

429