Table 4 AS events regulated between véraison and mid-ripening in only one variety
| Â | Â | Â | Â | IL - Gw | ILD - Gw | IL - Ri | ILD - Ri | ||
|---|---|---|---|---|---|---|---|---|---|
Gene IDa | GENE NAME – biological process/function | ASb (region)c | specificity | S3 | S4 | S3 vs S4 (FDR) | S3 | S4 | S3 vs S4 (FDR) |
Similar isoform ratios between Gw and Ri before mid-ripening | |||||||||
 Vitvi01g00135 | VPS52 - intracellular trafficking | IR-1 (5’UTR) | _ | 0.27 | 0.12 | 0.14 (3.2 E-03) | _ | _ | _ |
 Vitvi01g00135 | VPS52 - intracellular trafficking | IR-2 (5’UTR) | _ | _ | _ | _ | 0.54 | 0.76 | −0.22 (1.1 E-02) |
 Vitvi04g01976 | RSZ22 - splicing regulation | ES (5’UTR) | _ | _ | _ | _ | 0.32 | 0.15 | 0.18 (2.8 E-10) |
 Vitvi05g00214 | BOR3 - boron transport | A3SS (CDS) | _ | _ | _ | _ | 0.77 | 0.52 | 0.25 (5.9 E-06) |
 Vitvi05g00217 | RH40 - NMD and ribosome biogenesis | A3SS (CDS) | _ | _ | _ | _ | 0.42 | 0.22 | 0.20 (1.8 E-02) |
 Vitvi09g01457 | ECT5 - mRNA binding protein | A3SS (5’UTR) | _ | _ | _ | _ | 0.54 | 0.77 | −0.24 (2.0 E-02) |
 Vitvi13g00175 | UXT3 - xylose transport | IR (5’UTR) | _ | _ | _ | _ | 0.24 | 0.44 | −0.20 (7.6 E-04) |
 Vitvi13g00613 | PHOSPHOGLUCOSAMINE MUTASE - carbohydrate metabolism | ES (CDS) | _ | _ | _ | _ | 0.55 | 0.25 | 0.29 (2.5 E-07) |
 Vitvi18g01662 | STOP1 - response to acidic stress | ES (5’UTR) | _ | _ | _ | _ | 0.09 | 0.34 | −0.25 (1.8 E-07) |
 Vitvi18g00072 | PP2C27 - abiotic stress modulation | IR-1 (5’UTR) | _ | 0.78 | 0.52 | 0.26 (1.5 E-05) | _ | _ | _ |
 Vitvi18g00072 | PP2C27 - abiotic stress modulation | IR-2 (5’UTR) | _ | 0.88 | 0.73 | 0.15 (7.9 E-03) | _ | _ | _ |
Differential isoform ratios before mid-ripening | |||||||||
 Vitvi01g00819 | NLRC3 - intracellular signal transduction | IR (CDS) | ILs-Gw = 1 | _ | _ | _ | 0.47 | 0.86 | −0.40 (6.7 E-04) |
 Vitvi01g02098 | SIN3A ISOFORM G - transcription regulator | A3SS (3’UTR) | _ | _ | _ | _ | 0.96 | 0.79 | 0.17 (5.9 E-05) |
 Vitvi02g00597 | CKB1 - regulation of protein kinase activity | A5SS (CDS) | _ | _ | _ | _ | 0.54 | 0.81 | −0.27 (0.0 E+00) |
 Vitvi06g01662 | S1FA1 - regulation of transcription | A3SS (5’UTR) | _ | _ | _ | _ | 0.07 | 0.54 | −0.48 (6.7 E-03) |
 Vitvi13g01915 | AIMP1 - tRNA aminoacylation | A5SS (CDS) | ILs-Gw = 1 | _ | _ | _ | 0.65 | 0.91 | −0.26 (1.2 E-09) |
 Vitvi13g02138 | ARPP21 - calmodulin-binding | ES (5’UTR) | _ | 0.55 | 0.74 | −0.20 (1.3 E-02) | _ | _ | _ |
 Vitvi14g00256 | Unknown | ES (CDS) | _ | _ | _ | _ | 1.00 | 0.58 | 0.41 (2.1 E-02) |
 Vitvi14g02541 | PROBABLE LIGASE | ES (CDS) | ILs-Gw = 1 | _ | _ | _ | 0.60 | 0.96 | −0.36 (6.9 E-12) |
 Vitvi15g00621 | p53 - DNA damage repair | IR (3’UTR) | ILs-Gw ≤ 0.02 | _ | _ | _ | 1.00 | 0.81 | 0.19 (2.3 E-02) |
 Vitvi15g01145 | AHL9 - DNA-binding transcription factor | A5SS (5’UTR) | _ | 0.80 | 0.95 | −0.16 (8.9 E-05) | _ | _ | _ |
 Vitvi15g01145 | AHL9 - DNA-binding transcription factor | A3SS (5’UTR) | _ | 0.80 | 0.95 | −0.15 (2.8 E-03) | _ | _ | _ |
 Vitvi15g01145 | AHL9 - DNA-binding transcription factor | IR (5’UTR) | _ | 0.88 | 0.97 | −0.09 (1.6 E-02) | _ | _ | _ |
 Vitvi15g01173 | C1-THF synthase - folate synthesis | ES (CDS) | _ | 0.67 | 0.85 | −0.19 (1.0 E-03) | _ | _ | _ |
 Vitvi17g00038 | CLPC1 - protein translocation to chloroplast | A3SS (5’UTR) | _ | _ | _ | _ | 1.00 | 0.78 | 0.22 (1.1 E-02) |
 Vitvi17g00770 | WNK - response to stress | A3SS (CDS) | ILs-Gw ≤ 0.02 | _ | _ | _ | 0.58 | 0.27 | 0.31 (1.0 E-02) |