Table 1 Overview of RNA-seq data
From: Gene expression variation explains maize seed germination heterosis
Sample Name | Raw Reads | Clean Reads | Clean Reads Rate (%) | CleanQ30 | Mapped Reads | Mapped Rate (%) |
|---|---|---|---|---|---|---|
Z58-1 | 57,761,405 | 51,101,515 | 88.47 | 93.90;93.49 | 5,026,345,015 | 98.36 |
Z58-2 | 93,888,829 | 86,546,723 | 92.18 | 90.63;88.68 | 8,538,699,691 | 98.66 |
Z58-3 | 69,831,586 | 63,400,097 | 90.79 | 91.63;91.40 | 6,270,903,594 | 98.91 |
C72-1 | 63,556,262 | 58,160,335 | 91.51 | 88.45;89.53 | 5,722,395,361 | 98.39 |
C72-2 | 68,348,998 | 61,842,173 | 90.48 | 90.43;88.75 | 6,084,032,980 | 98.38 |
C72-3 | 67,664,143 | 63,387,769 | 93.68 | 90.43;91.73 | 6,246,230,757 | 98.54 |
Z58 × C72-1 | 75,728,777 | 70,049,119 | 92.5 | 92.83;90.29 | 6,915,949,519 | 98.73 |
Z58 × C72-2 | 58,642,488 | 53,024,538 | 90.42 | 90.33;89.92 | 5,238,294,109 | 98.79 |
Z58 × C72-3 | 67,336,587 | 61,114,686 | 90.76 | 89.43;85.13 | 6,016,740,837 | 98.45 |
C72 × Z58-1 | 83,526,998 | 77,354,353 | 92.61 | 91.06;91.53 | 7,607,800,618 | 98.35 |
C72 × Z58-2 | 77,185,580 | 71,458,410 | 92.58 | 92.98;90.25 | 7,024,361,703 | 98.3 |
C72 × Z58-3 | 67,380,639 | 63,182,825 | 93.77 | 92.61;92.03 | 6,220,980,950 | 98.46 |