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Table 1 Gene-specific primers for real time PCR

From: Identification of transcriptome induced in roots of maize seedlings at the late stage of waterlogging

Primer name

Primer

isovaleryl-CoA dehydrogenase

CCACCACTACACTATCCCCTC

 

AGCGAACCAAACCACCGGCT

prolyl 4-hydroxylase

TTCCGCGCCCGCGAAGAAAA

 

CAGGTGGGTGGTGTGGGGGA

glutamate synthase1

CGTGGTGGTTGTGGAGCGGA

 

AAGCCCTTGCTTGCTGGCCC

acetyl-coenzyme A carboxylase

CGTGGTGGTTGTGGAGCGGA

 

AAGCCCTTGCTTGCTGGCCC

ethylene-responsive protein

ATACGTCTCCGCCGCGTCCT

 

GCGTGAGCTCCCTCTGCTGC

alanine aminotransferase

AAGGCCGAAGGAGCAATGTAT

 

GCAGCCTCGATTGCCTTCT

aspartate aminotransferase

GGGTTGGATTTTGAGGGAAT

 

CCACTGTTCAGGAGTTGGGT

alcohol dehydrogenase

GGGGATTCTGAAACCTGGAC

 

ACCCTTCTCAGAACAACCCC

sucrose synthase

GGGGATTCTGAAACCTGGAC

 

ACCCTTCTCAGAACAACCCC

auxin response factor

CACCAGGCACATGCAAAGAG

 

TTTTCCTGGGAATGCTGTTTCT

coproporphyrinogen III oxidase

AAGGGGGAGGCCGGCAAGAA

 

TACCCGCGGCGAAGAATGGC

hypoxia induced protein

GGTTGCTGGCTGCCTGGCTT

 

CCGTACGACGCTGGCTCACG

DNA-binding protein

ACCGGGATTCCCTCCGCCAA

 

TCACCGCCAGCTTGGCATCG

ubiquitin-activating enzyme E1

ACCCGGGTGCACCATGGATCT

 

CATCGCCACTAGCCGCTCCC

putative MAPK

TGCTGCAGCTGTGGACACCC

 

CCCGCAGTATGCGTGTGGCA

translation initiation factor eIF-2B

CCCCTACCCCATCTCCCGGC

 

CCTCCACCTTCCGGCGCTTG

protein phosphatase 2A regulatory subunit A

GCTCCTACCCTGCCCCGTCT

 

GGGGTCCGGATCGGGCTTCT

NADP-dependent malic enzyme

AGCCAGTGGAGCCTTGGCCT

 

GGAGCAAGTGGAGGCTGCCG

Unigene285

TCGACAGCGGAGCGATCGAA

 

CCCCCGGGCAGCACATACCT

Unigene2

ACCAGGCTGGGGCAAGAGGA

 

ACCGTCACCACAGCGGGATCA

pyruvate kinase

CAGGCTTCCGTCACAGGCAGT

 

CCAAGGCTCAAGAGATCACAGTTA

organic anion transporter

CGAGCCGTGACCACCCAACA

 

GAAGATCTAGGCGGCGGCAGCA

actin

AAGTACCCGATTGAGCATGG

 

GATGGAGTTGTACGTGGCCT