Table 2 De novo insertion sites of Dart-related TEs identified by transposons-display (TD) (designated as Dart-TDI) in the rice-Zizania introgressants

Dart-TDI-1

Chr.3; position: 2726981;

non-coding

For: tcacgcagtagatgccaaag

Rev: gcacgtctccgtagctctct

RZ2

gcccatttggccacctcta

tgctagta

Dart-TDI-3

Chr.10; position:4241777;

OSJNAb0015J03.2 exon

For: gtagagggctcaatcgtgga

Rev: ctaaggtctcgaggcacacc

RZ1,

RZ2

gcccatttggccacctcta

gcatgaag

Dart-TDI-4

Chr.5; position: 29238540;

non-coding

For: gcccgtttggccacctctat

Rev: tgtaaaatgaccagcgacga

RZ1,

RZ2, RZ35

gcccatttggccacctcta

tgtggttg

Dart-TDI-5

Chr.5; position:14917879;

non-coding

For: tacggttcccattgttttcc

Rev: gggtgtgcacgatgttgtaa

RZ2

gcccatttggccacctcta

tacaatgt

Dart-TDI-7

Chr.12; position:12726861;

non-coding

For: ttgttgttagttttgcgtgtaga

Rev: gaaagcaggttggagaggtta

RZ1,

RZ2

gcccatttggccacctcta

cgctagta

Dart-TDI-8

Chr.3; position:27833204;

Os03g0699200 exon

For: taattaagttggaagtgggaca

Rev: tttctgtaagattacaaccagaggt

RZ1,

RZ2, RZ35

gcccatttggccacctcta

tggagtat

Dart-TDI-10

Chr.3; position:17730615;

non-coding

For: ctttcgtaggcgaaaagtgc

Rev: ctgcaaccacctgtctctga

RZ2

gcccatttggccacctcta

cgaagaac

Dart-TDI-11

Chr.4; position:638561;

non-coding

For: catgaattgggtgccatgta

Rev: ccccatagggtaggcaaaat

RZ1,

RZ2, RZ35

gcccatttggccacctcta

tctgaatt

Dart-TDI-16

Chr.5; position:10010289;

non-coding

For: gcccgtttggccacctctat

Rev: ggtggaggacctgctcaata

RZ1,

RZ2

gcccatttggccacctcta

ttcgacat

Dart-TDI-18

Chr.12; position:6156546;

non-coding

For: tgagcacgcctagctcagta

Rev: atgcacggcaactttctctt

RZ1,

RZ2

gcccatttggccacctcta

cctctcaa

Dart-TDI-19

Chr.12; position:6345593;

non-coding

For: gcccgtttggccacctctac

Rev: acaaatggcctcctgtgttc

RZ1

gcccatttggccacctcta

caagcagc

Dart-TDI-20

Chr.12; position:21951729;

non-coding

For: tccagccaaaccctgttc

Rev: gctcgccagatgtcaggt

RZ1

gcccatttggccacctcta

cgtcggga

Dart-TDI-21

Chr.1; position:19308190;

non-coding

For: tgctacagtagaagggcgtgta

Rev: atgcacatctggtcttttgatg

RZ2

gcccatttggccacctcta

cacacgta

Dart-TDI-22

Chr.2; position:6211564;

non-coding

For: ggatccgtttggatcagaga

Rev: tgcagcagctgattcatacc

RZ2

gcccatttggccacctcta

ccaatatt

Dart-TDI-24

Chr.5; position:10749306;

OSJNBa0037H03.12 intro

For: gagctgctcctgaaaaccac

Rev: gaattttccttgccgtgtgt

RZ1,

RZ2

gcccatttggccacctcta

tcatgttt

Dart-TDI-25

Chr.1; position:25299;

non-coding

For: gtgccggagaatgatttgat

Rev: atttccctcgatgcactgtc

RZ1,

RZ2

gcccatttggccacctcta

tacgcagc

Dart-TDI-26

Chr.2; position:10207338;

Os02g0277600 intro

For: gcccatttggccacctcta

Rev: cgaatgagtgtccttgatcg

RZ1,

RZ2

gcccatttggccacctcta

agcaaaac

Dart-TDI-27

Chr.12; position:23594158;

Os12g0572000 3'UTR

For: gcccgtttggccacctctac

Rev: agcaacccacagaacagctt

RZ35

gcccatttggccacctcta

ccaccctc

Dart-TDI-28

Chr.8; position:23713525;

non-coding

For: gcccgtttggccacctctac

Rev: tctgcggttgaaacaatgag

RZ2

gcccatttggccacctcta

cggctaac

Dart-TDI-29

Chr.7; position:20028374;

non-coding

For: gcccgtttggccacctctat

Rev: aaagtcaatggaaaggggaaa

RZ1,

RZ2

gcccatttggccacctcta

tcaaaatc

Dart-TDI-30

Chr.4; position:25704503;

Os04g0514800 exon

For: gcccatttggccacctcta

Rev: ggcaatgcggttggtttc

RZ1,

RZ2

gcccatttggccacctcta

cgctattc