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Table 5 Common QTL locations for traits related to desiccation and ABA content in leaf and kernel

From: QTLs and candidate genes for desiccation and abscisic acid content in maize kernels

     

QTLs from leaf

Bin

Locus or marker

QTL position (pcM) on REFMAP050110

Candidate gene

QTLs from kernel

Lebreton et al [39, 44, 45].

Tuberosa et al [39, 44, 45].

Pelleschi et al [39, 44, 45].

1.06

bnl5.59

305-344

NCED2

Aquaporin

Water_60_1

ABAL

 

RWC, ABAX

1.08-1.09

umc39c

455-463

NCED1

DW_80_3, FW_80_2

Water_80_1

ΨL

ABAL

RWC, ABAX

3.05

umc10

gsy406

212-244

Vp1

Slope_3

ABAX

 

RWC

ΨL

3.06

Gsy224

210-220

NCED3

   

ABAL

4.03-4.04

Gsy431

89 (66-97)

PM37

Slope_4

  

RWC

4.05-4.06

umc66

161-189

PIP1;2, PIP1;4

NCED6

%DW_30

ABAL

ABAL

ABAL, ΨL

ABAX

7.01-7.02

gsy113

umc116

163-173

179-189

PIP1;5, PIP2;1, PIP2;4, PIP2;6

Water_60_5

ABA_endosperm_30_2

stomatal conductance

ABAL

ABAL

ABAX

7.03

umc110

234-244

253-312

PSY3

ABA_embryo_80_2

ABA_endosperm_80_1

stomatal conductance

ABAL

RWC

9.04

umc114

108-149

Rab17-EST

%DW_80_5

ABA_embryo_60_1

ABAL

 

ΨL

9.07

gsy330

umc94

262-314

CCD-EST

%DW80_6

ABA_endosperm_80_2

  

ABAX

  1. For kernel, the LHRF_F3:4 segregating population derived from F2 × F252 crossing. For leaf, populations derived from Polj17 × F2 crossing [39, 44, 45], high ABA × low ABA lines [39, 44, 45] and F2 × MBS847 RILs [39, 44, 45]. Plants were submitted to water deprivation at comparable young stage in [39, 44, 45] and [39, 44, 45]. In [39, 44, 45], ABA concentration was determined in leaf samples from stressed plants irrigated with 50% normal rainfall during stem elongation and before anthesis. Gene codes are detailed in Tables 3 and 4. Genes in bold were mapped by PCR in this study (Table 4 and Additional file 2). Genes involved in kernel drying and located in the vicinity of the QTL confidence interval, are indicated in grey. ABA_embryo: [ABA] in embryo; ABA_endosperm: [ABA] in endosperm; ABAL: leaf [ABA] ABAX: xylem [ABA]; DW: kernel dry matter weight (mg/kernel); FW: kernel fresh matter weight (mg/kernel); %DW = DW/FW× 100; Slope: regression line slope of (Water/FW × 100) as a function of thermal time; RWC: relative water content; Water: kernel water content (mg/kernel); ΨL: leaf water potential.