Table 1 Programs used to predict trans-membrane domain of ICMEs of Arabidopsis
Programs and their websites | Proteins | No. of transmembrane domains |
|---|---|---|
DAS | ICME-LIKE1 | 6 (loosing cutoff 1.7 ); 2 (strict cutoff 2.2) |
| Â | ICME-LIKE2 | 4 (loosing cutoff 1.7 ); 4 (strict cutoff 2.2) |
| Â | ICME | 4 (loosing cutoff 1.7 ); 2 (strict cutoff 2.2) |
HMMTOP | ICME-LIKE1 | 2 (N-terminus: OUT) |
| Â | ICME-LIKE2 | 4 (N-terminus: IN) |
| Â | ICME | 4 (N-terminus: IN) |
SOSUI | ICME-LIKE1 | 2 |
| Â | ICME-LIKE2 | 2 |
| Â | ICME | NO |
TMpred | ICME-LIKE1 | 4 (Inside to outside helices);5 (Outside to inside helices) |
| Â | ICME-LIKE2 | 5 (Inside to outside helices);5 (Outside to inside helices) |
| Â | ICME | 5 (Inside to outside helices);7 (Outside to inside helices) |
TMHHM | ICME-LIKE1 | 1 (N-terminus: IN) |
| Â | ICME-LIKE2 | 1 (N-terminus: IN) |
| Â | ICME | 1 (N-terminus: IN) |