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Table 4 Summary of the new miRNAs

From: Identification of novel maize miRNAs by measuring the precision of precursor processing

Family

miRNA

length

(nt)

Sequence

Abundance (Reads per Million)

    

mixed

mixed

Embryo

endosperm

    

tissue I

tissue II

  

family1

miRNA1

21

CAGAAAAUCGGAGGAGAUUGA

0

0

0

1.36

family1

miRNA2

20

AGGAUACCGGAGGAGAUUGA

0

0

0.41

0

family2

miRNA3

21

UUAUAUAAGUUGGAUUAUGGU

0

0.08

0

0.94

family3

miRNA4

21

UGGAAUCAAGUGUGACAUGUU

0

0

0

1.25

family4

miRNA5

21

AUAUGGAUUGGAGGGGAUUGA

0

0

0.07

1.78

family5

miRNA6

21

ACCGGAGGGGAUUGGAGGGGC

3.96

0.5

0

0.42

family5

miRNA7

21

UUCUGGAGGGGAUUUGAGUUU

0

0

0

0.63

family6

miRNA8

20

GGGAUUGAGGGGGCUAUAAU

0

0

0.34

0.52

family6

miRNA9

21

GGGGAUUGGAGUGGCUAAAAU

0

0.08

1.35

0.84

family7

miRNA10

21

UUUGAAUGCACUAGAGCUAAU

0.29

0

0.54

5.85

family7

miRNA11

21

UUUGAAUGCACUAGAACUAAU

2.34

0.42

0.74

31.67

family8

miRNA12

21

UCCGAAUGGUGUAGAAGGAAU

0.59

1.17

0.14

6.06

family9

miRNA13

21

CUUGUGUCUUGGUUGUACGGU

0.73

0

0

0.31

family10

miRNA14

21

AGGAAUUCACUUAAUUCCCGU

0.73

0.08

0

0

family11

miRNA15

21

UGAAUUGACGAUUUUGCCCCU

0

0.75

0.07

0.42

family12

miRNA16

20

UAUCUCUACAACUAUUAAGA

0

0.08

0.81

0.1

family13

miRNA17

20

AUAUGGACGUGCAAAACACU

0

0.58

1.22

0

family14

miRNA18

21

UUUGGGGUGGAUACGUGGUCA

0

0.08

0

0.63

family15

miRNA19

21

AUGCAGAACAAUUUACAGACG

2.05

7.26

0.68

20.07

family16

miRNA20

21

AUGGUGCAUUGACUUGGUCAA

0.15

0.17

0

0.84

family17

miRNA21

20

CGACGAUCGAGAACGGCGAG

0

0

0.41

0

family18

miRNA22

20

GCCAUAGAUCUUGGCGCCGA

0

0.08

1.08

3.34

family19

miRNA23

21

UAUCUAGAAAAGCCGAAACGA

0.44

0.08

0.07

1.05

family20

miRNA24

21

AAAGCUAGAACGACUUAUAAU

0

0

0

1.25

family21

miRNA25

22

UCAGCGCCACCACGAUGACCUC

0.15

0.08

0.61

0

family22

miRNA26

22

UGAAACAAGUAUCUCGAGAGCA

25.06

0.17

0.68

100.24

family23

miRNA27

22

CAAGUGAGAGGUGGGAAUUCCC

0

0

0

0.63

family24

miRNA28

22

AAAAAGCCAGAACGAUUUAUGA

0.15

0.08

0.34

0.84

family25

miRNA29

21

UUUGGUAGUUUGAUUGGACGA

0

0

0

0.73

family26

miRNA30

20

ACCAGACUAGAGCAGCAGAU

0

15.86

0

0

family27

miRNA31

20

AUCCAUAGAGACAAAACACU

0

0.42

0.47

0.21

family28

miRNA32

21

UUUAUAAUUCGUUUGACUUUU

0.15

0.08

0

1.15

family29

miRNA33

20

AGAGACAAAAUACUGUAGAA

0

0.42

0.95

0

family30

miRNA34

21

UGGACAGGGAAAUGAAGGGGA

0.15

0

0

3.14

family31

miRNA35

21

UAGUACAUGGACCUAGAUGAC

0.59

1.5

0.47

18.81

family32

miRNA36

21

AAAUUAUAGGGCAUUUUUAUA

0

0

0.68

0.52

family33

miRNA37

20

GUUAUUUUCGGUAGCAUAAG

0

0

0.41

0.1

family34

miRNA38

21

AAAAAGAAACGGAGGGAGUAC

1.32

0.58

0.07

2.82

family35

miRNA39

21

AUACUAGGAGUGAAGGGAUCA

0.29

0

0.07

3.55

family36

miRNA40

21

UCGGGAUUGAAGGGGAUUGGA

0.73

0.08

0

2.82

family37

miRNA41

21

GGAGGGAAUUGGAGGGGCUAA

3.81

0.25

0.27

7.73

family38

miRNA42

21

UUAAUAGACCAAGACAUGCAC

0

5.26

0.07

0

family39

miRNA43

20

AUUAGUUGGCUAACUAUUAG

0

0

0.34

0

family40

miRNA44

21

AUAUGGAUUGGAGGGGAUUGA

0

0

0.07

1.78

family41

miRNA45

20

AAUUAGUCAUGGUAUGUUUA

0

0

0.34

0

family42

miRNA46

21

UGAGAGCAAGGAUACUGGAGG

0.73

0

0

0

family43

miRNA47

21

AAAUGAAACUGUAAAGGGCAU

0.29

0.67

0.54

2.72

family44

miRNA48

21

CGAAGATCTTGGGAAGATGAC

0

0

0

1.05

family45

miRNA49

21

UAGUUUGGGAACACUAAUUUC

0

0

0

0.52

family46

miRNA50

22

CUUUGACGUGGGAGAGAGGCAC

0

0

0.47

0.21

family47

miRNA51

20

AACUAAAAUGGAAUAAAAUG

0

1.59

26.53

8.15

family48

miRNA52

21

UUUUUGUGGGGGACUAUAAAC

0

0

0

0.52

family49

miRNA53

20

AACUAUUAGCUAGGAUGUUU

0

0

0.14

0.73

family50

miRNA54

21

UUCACCAUAUAAGAUUGUUGA

0

0

0

0.52

family51

miRNA55

20

GACGACCUCAGGAAGCUAUC

0

0

0.41

0

family52

miRNA56

21

UUUGGGAGCAAGUGGAAUGGA

0.15

0

0

0.52

family53

miRNA57

20

GAGACAAUUGCAUAUUUAGG

0

0.42

0.41

0.42

family54

miRNA58

20

GAAGAGGAACACAAACAGAG

0

0.5

0

0

family55

miRNA59

21

UAAGACGUUUUGACAUUUCUA

0

0.17

0.07

1.05

family56

miRNA60

21

GUGGAUUGGAUGGUAUUGAGU

0

0.17

0.2

0.52

family57

miRNA61

21

UUAGAUGGGAUACAUGAGAGG

0

0.5

0

1.67

family58

miRNA62

20

AGGGACUAAAGUUUAGUUAG

0

0.08

1.76

0.1

miR169

miRNA63

21

UAGCCAAGGAUGAGCUGCCUG

0.15

0.42

0.07

0.1

miR171

miRNA64

21

UUGAGCCGCGUCAAUAUCUCC

3.22

16.03

7.22

0.63

miR171

miRNA65

21

UUGAGCCGCGCCAAUAUCUCU

0

0.5

0.27

0

miR156

miRNA66

20

UGAUAGAAGAGAGUGAGCAC

0.88

2.25

8.91

3.14