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Table 1 Genes up-regulated by CPT-induced DNA damage.

From: Transcriptomic and proteomic profiling of maize embryos exposed to camptothecin

GO

Definition

GB# (EST)

UniGene ID

Probe Set ID

log2(R)

FDR

p-value Fisher

p-value ANOVA

Arab.ortholog gene AGI code (BLAST core)

Cell growth & division

 

Mob1-like protein/cell cycle checkpoint regulation

BM334263

Zm.87024

Zm.15219.2.A1_a_at

1.8880

0.0189

0.0000

<0.001

At5g45550 (1e-100)

Cell structure

 

Putative hydroxyproline-rich glycoprotein

BM073956

Zm.1956

Zm.1956.1.S1_at

3.0867

0.0486

0.0004

0.003

At1g63830 (5e-87)

 

Vegetative cell wall protein gp1 precursor

BM075217

Zm.2556

Zm.2556.1.A1_at

2.3581

0.0483

0.0004

0.003

At5g09530 (4e-55)

Defense and stress responses

 

Nucleoredoxin1/PDI-like protein

U90944

Zm.75215

Zm.411.1.A1_at

3.3395

0.0190

0.0000

<0.001

At1g60420 (0.0)

 

Class III peroxidase precursor

BG874182

Zm.3932

Zm.14563.1.A1_s_at

2.8933

0.0411

0.0002

0.002

At1g68850 (1e-85)

 

Acidic classI chitinase

L00973

Zm.93771

Zm.847.1.S1_at

2.5319

0.0190

0.0000

0.001

At3g12500 (7e-85)

 

NEP1-interacting protein

BE051646

Zm.1499

Zm.1499.2.S1_a_at

2.0058

0.0190

0.0000

<0.001

At3g05880 (1e-19)

 

Glutathione S-transferase GST 41

AF244706

Zm.81286

Zm.566.1.S1_at

1.3591

0.0486

0.0004

0.002

At3g09270 (7e-47)

 

Glutathione S-transferase GST 36

AF244701

Zm.561

Zm.561.1.A1_at

1.0026

0.0486

0.0004

0.002

At3g09270 (1e-51)

DNA replication, recombination and repair

 

Ribonucleoside-diphosphate reductase small chain

AY105596

Zm.6802

Zm.14324.3.A1_x_at

2.6765

0.0425

0.0003

0.002

At3g27060 (1e-153)

 

Ribonucleotide reductase R1 (large subunit)

BM079174

Zm.94425

Zm.5173.1.A1_at

2.4371

0.0205

0.0001

0.001

At2g21790 (1e-114)

 

ZmRAD51B (AtRAD51)

AF079429

Zm.632

Zm.632.1.S1_at

1.7976

0.0271

0.0001

0.001

At5g20850 (1e-166)

 

Putative DNA repair protein rhp16

AI665143

Zm.24329

ZmAffx.68.1.A1_at

1.6612

0.0041

0.0000

<0.001

At1g05120 (9e-73)

 

Replication protein A2

AI691259

Zm.3800

Zm.3800.1.S1_at

1.5970

0.0189

0.0000

<0.001

At3g02920 (1e-44)

 

Acetyltransferase, GNAT family protein

BM267811

Zm.9765

Zm.10129.1.A1_at

1.5045

0.0433

0.0003

0.002

At2g32030 (9e-47)

 

Putative X-ray induced gene 1 (XRI-1)

AY108750

Zm.6271

Zm.6271.2.S1_a_at

1,.2268

0.0190

0.0000

<0.001

At5g48720 (7e-32)

Energy

 

NADH dehydrogenase I subunit N

AY108360

Zm.9290

Zm.9290.1.A1_at

1.5489

0.0483

0.0004

0.002

At5g58260 (1e-73)

 

SC3 protein/Secretory carrier-associated membrane protein

CK826632

Zm.2391

Zm.2391.1.A1_at

1.3676

0.0282

0.0001

0.001

At1g61250 (1e-109)

Metabolism

 

Plastid ADP-glucose pyro-phosphorylase large subunit

BM379502

Zm.84929

Zm.12201.1.A1_at

2.7181

0.0486

0.0004

0.003

At5g19220 (0.0)

 

Glucosyltransferase

CN844543

Zm.16431

Zm.16431.1.S1_at

1.4698

0.0483

0.0004

0.002

At3g16520 (3e-88)

Protein processing

 

Purple acid phosphatase 1

CF041723

Zm.3526

Zm.3526.1.S1_at

2.6090

0.0486

0.0004

0.003

At1g14700 (1e-117)

 

Putative Tat binding prot.1 (TBP-1)-interact.prot.(TBPIP)

CA827618

Zm.13315

Zm.13315.1.S1_at

2.1725

0.0231

0.0001

0.001

At1g13330 (5e-65)

 

PI31 Proteasome inhibitor-like protein

BM078279

Zm.6974

Zm.6974.1.A1_at

1.2613

0.0250

0.0001

0.001

At3g53970 (3e-37)

Signal transduction andgene expression

 

NAC domain-containing protein 77

BM379544

Zm.4179

Zm.4179.1.A1_at

2.3089

0.0098

0.0000

<0.001

At5g18270 (3e-61)

 

NAC domain-containing protein 21/22

BM381180

Zm.76113

Zm.11843.1.A1_at

2.2599

0.0250

0.0001

0.001

At3g04060 (4e-21)

 

Putative Rop family GTPase, ROP7 (AtROP9)

AY104576

Zm.14010

Zm.1279.1.S1_at

1.1436

0.0483

0.0004

0.002

At4g28950 (1e-100)

Transposons

 

Transposon protein Pong subclass

BM073216

Zm.2207

Zm.2207.1.A1_at

3.4310

0.0098

0.0000

<0.001

At2g13770 (2e-29)

Unknown

 

Unknown protein

CF637079

Zm.84375

Zm.3785.1.S1_at

4.4767

0.0041

0.0000

<0.001

At1g29640 (6e-13)

 

Unknown protein

BM078256

Zm.84635

Zm.4210.1.S1_at

3.3151

0.0292

0.0001

0.001

At3g47070 (2e-06)

 

Leucine-rich repeat, cysteine-containing protein

CK370970

Zm.98655

Zm.17789.1.A1_at

3.0884

0.0098

0.0000

<0.001

At2g06040 (4e-40)

 

Unknown protein

CF974775

Zm.17071

Zm.17071.1.S1_at

2.5487

0.0143

0.0000

<0.001

At5g02220 (0.0)

 

Unknown protein

BG840178

Zm.3570

Zm.3570.1.A1_at

2.0342

0.0141

0.0000

<0.001

At5g39530 (6e-08)

 

Unknown protein

BM073017

Zm.2445

Zm.2445.1.A1_at

1.6888

0.0223

0.0001

0.001

Nd

 

Histidine kinase-like ATPase superfamily

BQ485400

Zm.10451

Zm.10451.1.S1_at

1.5810

0.0189

0.0000

<0.001

At1g19100 (4e-04)

 

Unknown protein

CO521239

Zm.19124

Zm.19124.1.A1_at

1.3036

0.0189

0.0000

<0.001

At5g35320 (2e-14)

 

Unknown protein

AY106977

Zm.82291

Zm.2968.1.A1_at

1.2993

0.0483

0.0004

0.002

Nd

 

Unknown protein

BG841197

Zm.61674

Zm.2192.1.A1_at

1.1864

0.0189

0.0000

<0.001

Nd

 

Unknown protein

BQ538249

Zm.10551

Zm.10551.1.A1_at

1.0488

0.0438

0.0003

0.002

At1g31720 (6e-23)

 

AAA-type ATPase/ATPase2

CK826796

Zm.94919

Zm.16211.1.S1_at

3.2748

0.0189

0.0000

<0.001

At3g28540 (0.0)

  1. GB#, maize EST accession number in GenBank database. UniGene ID code; Probe set ID in Affymetrix chip; Affymetrix chip hybridization parameters: R ≥ 2.0 and false discovery rate (FDR) ≤ 0.05.
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BMC Plant Biology

ISSN: 1471-2229

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