Table 3 Candidate genes for control of fruit polyphenolic content found in the apple gene prediction set (Additional File 2; figure S1).

PAL

phenylalanine ammonia lyase

ES790093

MDP0000191304

4

8,075

MDP0000388769

12

15,419

C4H

cinnamate 4-hydroxylase

EB139247

MDP0000229348

11

5,193

MDP0000225698

3

5,531

HCT/HQT

hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyl transferase

AM690438

MDP0000264424

9

27,594

(artichoke HQT1)

MDP0000307780

17

19,929

C3H

p-coumarate 3-hydroxylase

NP_850337

MDP0000466557

8

35,073

MDP0000836708

15

53,887

CHS

chalcone synthase

AB074485

MDP0000686661

9

16,919

MDP0000686666

9

16,932

MDP0000302905

14

26,679

CHI

chalcone isomerase

CN946541

MDP0000759336

14

12,382

MDP0000682953

1

20,836

MDP0000205890

11

19,398

F3H

flavanone 3-hydroxylase

AB074486

MDP0000704377

2

11,905

MDP0000139343

5

23,797

F3'H

flavanone 3'-hydroxylase

ACR14867

MDP0000190489

6

26,649

MDP0000286933

14

31,156

DFR

dihydroflavonol reductase

AF117268

MDP0000494976

12

26,022

MDP0000440654

8

4,393

ANS

anthocyanidin synthase (LDOX)

AF117269

MDP0000360447

6

17,129

UFGT

UDP-glucose flavonoid 3-O-glucosyl transferase

AF117267

MDP0000376418

9

31,316

MDP0000706999

7

14,018

FLS

flavonol synthase

EB137300

MDP0000260404

8

17,498

LAR

leucoanthocyanidin reductase

AY830131

MDP0000376284

16

1,536

AY830132

MDP0000140621

13

2,849

ANR

anthocyanidin reductase (Banyuls)

DQ099803

MDP0000243194

5

2,430

MDP0000494976

12

26,022

GT1

glucosyl transferase

EB124403

MDP0000146703

1

14,114

MDP0000875654

7

19517

GT2

glucosyl transferase

EB141701

MDP0000316379

14

16,678