Table 2 Sequencing statistics and mapping results of bulked samples using Maq-default and Maq-120 analysis
| Â | Â | Â | Â | Maq-default analysis | Maq-120 analysis | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Library | PE reads | Raw reads | raw reads mapping | % | reads in pairs | % 1 | raw reads mapping | % | reads in pairs | % 1 |
High Bulk | 400-bp | 21,501,822 | 43,003,644 | 20,481,156 | 47.6% | 17,044,066 | 83.2% | 22,978,578 | 53.4% | 19,080,072 | 83.0% |
| Â | 250-bp | 31,917,705 | 63,835,410 | 22,992,792 | 36.0% | 20,270,532 | 88.2% | 26,489,852 | 41.5% | 22,917,204 | 86.5% |
| Â | Total | 53,419,527 | 106,839,054 | 43,473,948 | 40.7% | 37,314,598 | 85.8% | 49,468,430 | 46.3% | 41,997,276 | 84.9% |
Low Bulk | 400-bp | 28,215,779 | 56,431,558 | 27,059,022 | 48.0% | 22,074,113 | 81.6% | 30,353,820 | 53.8% | 24,719,488 | 81.4% |
| Â | 250-bp | 32,981,686 | 65,963,372 | 25,389,354 | 38.5% | 22,597,308 | 89.0% | 29,236,028 | 44.3% | 25,539,200 | 87.4% |
| Â | Total | 61,197,465 | 122,394,930 | 52,448,376 | 42.9% | 44,671,421 | 85.2% | 59,589,848 | 48.7% | 50,258,688 | 84.3% |