Table 2 The order and positions of BAC clones in scaffolds A and B after final assembly of the sequence
Clone name | Contigs | Bases | Start | End | |
|---|---|---|---|---|---|
A | Scaffold A (ctg447) | 40 | 1,264,820 | ||
A01 | TaaCsp3DShA_0045N17 | 7 | 107,963 | 1 | 107,963 |
A02 | TaaCsp3DShA_0065O14 | 3 | 66,793 | 97,146 | 163,938 |
A03 | TaaCsp3DShA_0008G17 | 4 | 112,416 | 123,308 | 235,723 |
A04 | TaaCsp3DShA_0023I21 | 5 | 138,394 | 208,205 | 346,598 |
A05 | TaaCsp3DShA_0072N17 | 3 | 132,725 | 266,400 | 399,124 |
A06 | TaaCsp3DShA_0082H07 | 1 | 121,720 | 346,593 | 468,312 |
A07 | TaaCsp3DShA_0072H10 | 1 | 121,299 | 443,494 | 564,792 |
A08 | TaaCsp3DShA_0037C23 | 1 | 123,986 | 460,986 | 584,971 |
A09 | TaaCsp3DShA_0031N24 | 4 | 110,210 | 562,811 | 673,020 |
A10 | TaaCsp3DShA_0009G11 | 2 | 103,381 | 628,179 | 731,559 |
A11 | TaaCsp3DShA_0004D04 | 6 | 141,661 | 660,744 | 802,404 |
A12 | TaaCsp3DShA_0087O11 | 6 | 126,287 | 731,586 | 857,872 |
A13 | TaaCsp3DShA_0058C08 | 1 | 110,681 | 834,837 | 945,517 |
A14 | TaaCsp3DShA_0024N06 | 4 | 120,824 | 912,828 | 1,033,651 |
A15 | TaaCsp3DShA_0011A13 | 2 | 107,890 | 994,129 | 1,102,018 |
A16 | TaaCsp3DShA_0055O10 | 2 | 122,114 | 1,056,627 | 1,178,740 |
A17 | TaaCsp3DShA_0015G21 | 2 | 104,099 | 1,074,652 | 1,178,740 |
A18 | TaaCsp3DShA_0036F12 | 15 | 101,762 | 1,163,059 | 1,264,820 |
B | Scaffold B (ctg1484) | 22 | 333,768 | ||
B01 | TaaCsp3DShA_0052A05 | 12 | 109,012 | 1 | 109,012 |
B02 | TaaCsp3DShA_0054D16 | 8 | 113,313 | 31,157 | 114,469 |
B03 | TaaCsp3DShA_0053N07 | 5 | 112,439 | 89,026 | 201,464 |
B04 | TaaCsp3DShA_0089C07 | 8 | 114,151 | 161,333 | 275,483 |
B05 | TaaCsp3DShA_0090J06 | 6 | 114,272 | 219,496 | 333,767 |
C | Singleton | ||||
C01 | TaaCsp3DShA_0061C24 | 8 | 112,713 | 1 | 112,713 |