From: Genome-wide association studies for agronomical traits in a world wide spring barley collection
SNP | Chr | Position | MAF | P-values | -log10(P) | 2 (%) | Effect | QTL | Reference QTL | Literature |
---|---|---|---|---|---|---|---|---|---|---|
SNP20 | 1H | 43.28 | 0.099 | 0.0076 | 2.12 | 0.3 | -0.915 | QTL1_SC | Â | Â |
SNP22 | 1H | 47.47 | 0.340 | 0.0045 | 2.35 | 0.34 | Â | Â | Â | Â |
SNP36 | 1H | 51.23 | 0.396 | 0.0299 | 1.52 | 0.2 | -0.78 | QTL2_SC | Â | Â |
SNP47 | 1H | 55.49 | 0.495 | 0.0190 | 1.72 | 0.22 | Â | Â | Â | Â |
SNP53 | 1H | 60.19 | 0.309 | 0.0105 | 1.98 | 0.28 | Â | Â | Â | Â |
SNP56 | 1H | 61.53 | 0.264 | 0.0059 | 2.23 | 0.32 | 1.34 | QTL3_SC | Â | Â |
SNP66 | 1H | 69.53 | 0.474 | 0.0148 | 1.83 | 0.25 | Â | Â | Â | Â |
SNP92 | 1H | 101.45 | 0.288 | 0.0009 | 3.04 | 0.43 | -0.70 | QTl4_SC | Â | Â |
SNP108 | 1H | 126.01 | 0.108 | 0.0236 | 1.63 | 0.32 | -0.76 | QTL5_SC | Â | Â |
SNP136 | 2H | 33.74 | 0.349 | 0.0093 | 2.03 | 0.28 | -0.63 | QTL6_SC | Qsch2a | [76] |
SNP174 | 2H | 63.53 | 0.406 | 0.0142 | 1.85 | 0.25 | Â | Â | Â | Â |
SNP176 | 2H | 63.53 | 0.184 | 0.0315 | 1.50 | 0.19 | Â | Â | Â | Â |
SNP180 | 2H | 64.24 | 0.225 | 0.0066 | 2.18 | 0.31 | -1.14 | QTL7_SC | Â | Â |
SNP181 | 2H | 64.24 | 0.209 | 0.0137 | 1.86 | 0.26 | Â | Â | Â | Â |
SNP192 | 2H | 71.12 | 0.474 | 0.0259 | 1.59 | 0.21 | -0.68 | QTl8_SC | QStr.StMo-2H | Grain genes |
SNP222 | 2H | 90.10 | 0.485 | 0.0277 | 1.56 | 0.22 | -1.05 | QTL9_SC | Qsch2b | [76] |
SNP311 | 3H | 51.73 | 0.214 | 0.0227 | 1.64 | 0.22 | -1.15 | QTL10_SC | Â | Â |
SNP334 | 3H | 55.57 | 0.373 | 0.0067 | 2.17 | 0.31 | Â | Â | Â | Â |
SNP358 | 3H | 72.26 | 0.358 | 0.0087 | 2.06 | 0.29 | 0.96 | QTL11_SC | Â | Â |
SNP507 | 4H | 65.05 | 0.491 | 0.0160 | 1.80 | 0.23 | -0.55 | QTL12_SC | Â | Â |
SNP539 | 4H | 111.68 | 0.175 | 0.0048 | 2.32 | 0.33 | 1.18 | QTL13_SC | Â | Â |
SNP543 | 4H | 123.29 | 0.256 | 0.0039 | 2.41 | 0.35 | 1.10 | QTL14_SC | Â | Â |
SNP599 | 5H | 58.70 | 0.351 | 0.0272 | 1.57 | 0.21 | 0.67 | QTL_15SC | QStr.StMo-5H | Grain genes |
SNP612 | 5H | 65.49 | 0.445 | 0.0135 | 1.87 | 0.26 | Â | Â | Â | Â |
SNP643 | 5H | 110.26 | 0.104 | 0.0080 | 2.10 | 0.27 | -1.79 | QTL16_SC | Â | Â |
SNP725 | 6H | 22.35 | 0.469 | 0.0117 | 1.93 | 0.27 | 0.73 | QTL17_SC | Â | Â |
SNP727 | 6H | 24.36 | 0.433 | 0.0244 | 1.61 | 0.22 | Â | Â | Â | Â |
SNP795 | 6H | 71.08 | 0.392 | 0.0282 | 1.55 | 0.2 | -0.57 | QTL18_SC | QStr.StMo-6H | Grain genes |
SNP823 | 6H | 112.32 | 0.299 | 0.0252 | 1.60 | 0.21 | -0.81 | QTL19_SC | Â | Â |
SNP836 | 7H | 0 | 0.199 | 0.0175 | 1.76 | 0.24 | -0.74 | QTL20_SC | Â | Â |
SNP844 | 7H | 12.42 | 0.096 | 0.0003 | 3.50 | 0.65 | -1.72 | QTL21_SC | waxy | Grain genes |
SNP893 | 7H | 78.22 | 0.127 | 0.0040 | 2.40 | 0.53 | 0.81 | QTL22_SC | Â | Â |
SNP918 | 7H | 87.97 | 0.297 | 0.0296 | 1.53 | 0.17 | 0.38 | QTL23_SC | Qsch7a | [76] |
SNP930 | 7H | 121.09 | 0.074 | 0.0083 | 2.08 | 0.24 | -1.74 | QTL24_SC | Â | Â |
SNP951 | 7H | 149.03 | 0.24 | 0.0168 | 1.77 | 0.27 | -0.76 | QTL25_SC | Â | Â |