From: smRNAome profiling to identify conserved and novel microRNAs in Stevia rebaudiana Bertoni
miRNA family | miRNA | Sequence | Length (nt) | miRNA* sequenced | Reads | Homolog |
---|---|---|---|---|---|---|
156/157 | miR156a | UGACAGAAGAGAGUGAGCACAUC | 23 | N | 124 | bna-MIR156a |
 | miR156b | UGACAGAAGAGAGUGAGCAUC | 21 | N | 124 | ath-MIR156a |
 | miR156c | UUGACAGAAGAUAGAGAGCACAC | 23 | N | 124 | ath-MIR157c |
 | miR156d | UGACAGAAGAGAGUGAGCACAU | 22 | N | 124 | rco-MIR156d |
 | miR156e | UGACAGAAGAGAGUGAGCACUC | 22 | N | 3 | ath-MIR156e |
 | miR157a | UUGACAGAAGAUAGAGAGCACAC | 23 | N | 1 | ath-MIR157a |
159 | miR159a | UUUGGAUUGAAGGGAGCUCUAUC | 23 | N | 11759 | ath-MIR159a |
 | miR159b | UUUGGAUUGAAGGGAGCUCAUC | 22 | N | 11827 | ath-MIR159b |
 | miR159c | UUUGGAUUGAAGGGAGCUCUAAU | 23 | N | 12411 | vvi-MIR159c |
 | miR159d | UUUGGAUUGAAGGGAGCUCUGUC | 23 | N | 80 | sof-MIR159d |
 | miR159e | UUGGAUUGAAGGGAGCAUC | 19 | N | 6 | osa-MIR159e |
 | miR159f | UUGGAUUGAAGGGAGCUCUAAU | 22 | N | 136 | osa-MIR159f |
 | miR159j | UUUGGAUUGAAGGGAGCUCU | 20 | N | 74 | zma-MIR159j |
 | mirR159k | UUUUGGAUUGAAGGGAGAUC | 20 | N | 74 | zma-MIR159k |
160 | miR160a | UGCCUGGCUCCCUGUAUGCCAA | 22 | N | 1 | ath-MIR160a |
163 | miR163 | AGAUGACUUGGAACUUCGAUC | 21 | N | 2 | ath-MIR163 |
164 | miR164c | UGGAGAAGCAGGGUACGUGCAUC | 23 | N | 8 | osa-MIR164c |
 | miR164h | UGGAGAAGCAGGGCACGUAUC | 21 | N | 2 | zma-MIR164h |
165 | miR165a | UCGGACCAGACUUCAUCCCCCA | 22 | N | 5 | ath-MIR165a |
 | miR165b | UCGGACCAGGCUUCAUCCCCCUC | 24 | N | 5 | ath-MIR165b |
166 | miR166a | UCGGACCAGGCUUCAUUCCCCAU | 22 | Y | 412 | ath-MIR166a |
 | miR166b | UCGGACCAGGCUUCAUUCCAUC | 23 | N | 398 | crt-MIR166b |
 | miR166c | UCGGACCAGGCUUCAUUCCUCAU | 23 | Y | 357 | mtr-MIR166c |
 | miR166d | UCGGACCAGGCUUCAUUCCCCAC | 23 | Y | 396 | ath-MIR166d |
 | miR166e | UCGGACCAGGCUUCAUUCCCCA | 22 | Y | 292 | ath-MIR166e |
 | miR166f | UCUCGGACCAGGCUUCAUUC | 20 | N | 379 | bdi-MIR166f |
 | miR166g | UCGGACCAGGCUUCAUUCCUCUC | 23 | Y | 357 | osa-MIR166g |
 | miR166h | UCGGACCAGGCUUCAUUCCUCGA | 23 | N | 357 | osa-MIR166h |
 | miR166i | UCGGACCAGGCUUCAUUCCCC | 21 | N | 291 | ath-MIR166b |
 | miR166j | UCGGACCAGGCUUCAUAUC | 19 | N | 291 | ptc-MIR166j |
 | miR166k | UCGGACCAGGCUUCAUUCCU | 20 | N | 304 | sbi-MIR166k |
 | miR166l | UCGGACCAGGCUUCAUUCCUCAC | 23 | N | 357 | zma-MIR166l |
 | miR166m | UCGGACCAGGCUUCAUUCCUCC | 22 | N | 397 | zma-MIR166m |
 | miR166n | UCGGACCAGGCUUCAUUCCUUAU | 23 | N | 370 | ptc-MIR166n |
 | miR166o | UCGGACCAGGCUUCAUUCCUUCG | 23 | N | 286 | ptc-MIR166o |
 | miR166p | UCGGACCAGGCUCCAUUCC | 19 | N | 1 | ptc-MIR166p |
 | miR166q | UCGGACCAGGCUUCAUUCCUUUC | 23 | N | 286 | ptc-MIR166q |
167 | miR167a | UGAAGCUGCCAGCAUGAUCUGAUC | 24 | N | 9629 | ccl-MIR167a |
 | miR167b | UGAAGCUGCCAGCAUGAUCUAAUC | 24 | N | 9637 | bna-MIR167b |
 | miR167c | GAAGCUGCCAGCAUGAUCUGAUC | 23 | N | 7862 | bdi-MIR167c |
 | miR167d | UGAAGCUGCCAGCAUGAUCUGAU | 23 | N | 7853 | bdi-MIR167d |
 | miR167e | UGAAGCUGCCAGCAUGAUCUGUC | 23 | N | 73 | osa-MIR167e |
 | miR167f | UGAAGCUGCCAGCAUGAUCAUC | 22 | N | 21 | gma-MIR167f |
 | miR167g | UGAAGCUGCCAGCAUGAUCUGA | 22 | N | 7806 | gma-MIR167g |
 | miR167h | UGAAGCUGCCAGCAUGAUCUG | 21 | N | 13 | osa-MIR167h |
 | miR167i | UGAAGCUGCCAGCAUGAUCUAC | 22 | N | 65 | sbi-MIR167i |
 | miR167j | UGAAGCUGCCAGCAUGAUCUGC | 22 | N | 13 | osa-MIR167j |
168 | miR168a | UCGCUUGGUGCAGGUCGGGAAUC | 23 | Y | 71 | ath-MIR168a |
 | miR168b | UCGCUUGGUGCAGGUCGGGAAU | 22 | Y | 69 | ath-MIR168b |
169 | miR169f | UAGCCAAGGAUGACUUGCCUAUC | 23 | N | 7 | osa-MIR169f |
171 | miR171a | UGAUUGAGCCGUGCCAAUA | 19 | N | 10 | osa-MIR171b |
 | miR171b | UGAGCCGUGCCAAUAUCAUC | 20 | N | 10 | ath-MIR171b |
 | miR171c | UUAUAGAGCCGUGCCAAUA | 19 | N | 10 | osa-MIR171c |
 | miR171d | UGAUUGAGCCGUGCCAAUC | 19 | N | 10 | osa-MIR171d |
172 | miR172a | AGAAUCUUGAUGAUGCUGCAUUC | 23 | Y | 20 | ath-MIR172a |
 | miR172b | AGAAUCUUGAUGAUGCUGCAUC | 22 | N | 20 | ath-MIR172b |
 | miR172c | AGAAUCUUGAUGAUGCUGCAGAU | 23 | N | 24 | ath-MIR172c |
 | miR172d | AGAAUCUUGAUGAUGCUGCAUAU | 23 | N | 25 | osa-miR172d |
 | miR172e | AGAAUCUUGAUGAUGCUGCAUCA | 23 | N | 20 | tcc-MIR172e |
 | miR172f | AGAAUCUUGAUGAUGCUGCA | 20 | N | 20 | ath-MIR172a |
319 | miR319a | UUGGACUGAAGGGAGCUCCCUUC | 23 | N | 76 | ath-MIR319a |
 | miR319b | UUGGACUGAAGGGAGCUCCAUC | 22 | N | 76 | ath-MIR319b |
 | miR319c | UUGGACUGAAGGGAGCUCCCU | 21 | N | 78 | vvi-MIR319c |
 | miR319d | UUGGACUGAAGGGAGCAUC | 19 | N | 23 | ptc-MIR319d |
 | miR319e | UUGGACUGAAGGGAGCUCCC | 20 | N | 14 | ppt-MIR319e |
 | miR319f | UUGGACUGAAGGGAGCUCCCC | 21 | N | 78 | vvi-MIR319f |
 | miR319g | UUGGACUGAAGGGAGCUCCCACC | 23 | N | 528 | vvi-MIR319g |
 | miR319h | UGGACUGAAGGGAGCUCAUC | 20 | N | 12 | ptc-MIR319g |
393 | miR393a | UCCAAAGGGAUCGCAUUGAUCCC | 23 | N | 4 | ath-MIR393a |
 | miR393b | UCCAAAGGGAUCGCAUUGAUCCAU | 24 | N | 4 | ath-MIR393b |
 | miR393c | UCCAAAGGGAUCGCAUUUAUC | 21 | N | 2 | zma-MIR393a |
 | miR393d | UCCAAAGGGAUCGCAUUGAUC | 21 | N | 2 | ptc-MIR393d |
394 | miR394a | UUGGCAUUCUGUCCACCUCCAUC | 23 | N | 1554 | vvi-MIR394a |
 | miR394b | UUGGCAUUCUGUCCACCUCCUC | 22 | N | 2 | ath-MIR394b |
 | miR394c | UUUGGCAUUCUGUCCACCUCCAU | 23 | N | 1554 | vvi-MIR394c |
396 | miR396a | UUCCACAGCUUUCUUGAACUAUC | 23 | Y | 23 | vvi-MIR396a |
 | miR396b | UUCCACAGCUUUCUUGAACUUUC | 23 | Y | 17 | aqc-MIR396b |
 | miR396c | UUCCACAGCUUUCUUGAACUUAU | 23 | N | 17 | osa-MIR396c |
 | miR396d | UUCCACAGCUUUCUUGAACUUC | 22 | N | 17 | ptc-MIR396d |
 | miR396e | UUCCACAGCUUUCUUGAACU | 20 | N | 29 | tcc-MIR396e |
 | miR396f | UUCCACGGCUUUCUUGAACUGAU | 23 | N | 32 | ptc-MIR396f |
 | miR396g | UUCCACGGCUUUCUUGAACAUC | 22 | N | 2 | ptc-MIR396g |
397 | miR397b | AUUGAGUGCAGCGUUGAUGAAUC | 23 | N | 2 | bdi-MIR397b |
403 | miR403a | UUAGAUUCACGCACAAACUCGUC | 23 | N | 1 | ptc-MIR403a |
408 | miR408a | UGCACUGCCUCUUCCCUUA | 19 | N | 1 | sof-MIR408a |
 | miR408b | UGCACUGCCUCUUCCCUGGAUC | 22 | N | 6 | ppt-MIR408b |
414 | miR414 | AUCAUCAUCAUCAUCAUCA | 19 | N | 1 | ath-MIR414 |
482 | miR482a | UCUUCCCCACACCUCCCAU | 19 | N | 1 | gso-MIR482a |
856 | miR856* | UGAUGUUAAUUGUGGUAUC | 19 | Y | 1 | aly-MIR856 |
858 | miR858 | UUCGUUGUCUGUUCGACCUUGA | 22 | N | 2 | ath-MIR858b |
894 | miR894 | CGUUUCACGUCAGGUUCACCA | 21 | N | 17 | ppt-MIR894 |
1310 | miR1310 | AUCGGGGGCGCAACGCCUC | 19 | N | 2 | pta-MIR1310 |
1317 | miR1317 | AAAUGAUCUUGGAGGUUAUC | 20 | N | 3 | osa-MIR1317 |
1511 | miR1511 | AACCUGGCUCUGAUACCAUC | 20 | N | 1 | gma-MIR1511 |
1850 | miR1850 | UGUUUAGUUGCCAUCAAUC | 19 | N | 2 | osa-MIR1850 |
2111 | miR2111a | UAAUCUGCAUCCUGAGGUUUAUC | 23 | N | 1 | ath-MIR2111a |
2916 | miR2916 | GGGGGCUCGAAGACGAUCAUC | 21 | N | 68 | peu-MIR2916 |
3520 | miR3520 | AGAGAGACUUUUGAAUUAUC | 20 | N | 1 | ahy-MIR3520 |
5084 | miR5084 | UAGAGUACUGUAGAGGAUC | 19 | N | 1 | tae-MIR5084 |
5139 | miR5139 | AACCUGGCUCUGAUACCAUC | 20 | N | 2 | rgl-MIR5139 |