Dissecting genetic architecture of grape proanthocyanidin composition through quantitative trait locus mapping

BMC Plant Biology

Table 2 Summary of candidate genes for association tests

			Sequence (size and localisation)					Number of SNPs
chr	Gene	References	5'-UTR	Exon	Intron	3'-UTR	seq/gene size	5'-UTR	Exon	Intron	3'-UTR	total	QTL
1	VvLAR1	[14]	-	1008	412	65	1420/2980	-	21	9	-	30	Skin: catT, mDP. Seed: concB, galEx, catT, epiT, Ftranscis_Ex, Ftranscis_all
6	VvF3'5'H 1.1	[19, 20]	-	1296	50	-	1346/2325	-	4	-	-	4	Skin: epiEx, egcEx, catT, mDP, F3pr35, Ftranscis_all
6	VvF3'5'H 2.1	[19, 20]	-	630	12	24	642/1932	-	3	0	0	3	Skin: epiEx, egcEx, catT, mDP, F3pr35, Ftranscis_all
8	VvMYB5a	[49]	66	687	382	36	1069/1069	1	12	2	1	16	Skin: concP, concB, concK, epiEx, egcEx, epiT, F3pr35. Seed: concB, catEx, catT, Ftranscis_T
11	VvMYBPA2	[50]	93	855	263	37	1148/1479	-	14	5	-	19	No QTL
13	VvCHI1	[17, 21]	-	440	216	54	656/1486	-	3	5	1	9	Skin: concK, epiEx. Seed: concK, catT, Ftranscis_Ex, Ftranscis_all
13	VvCHI2	[17, 21]	-	206	452	46	658/2524	-	1	6	-	7	Skin: concK, epiEx. Seed: concK, catT, Ftranscis_Ex, Ftranscis_all
15	VvMYBPA1	[52]	384	861	87	1 0	948/948	8	11	-	-	19	Seed: concP, catEx, Ftranscis_Ex
18	VvDFR	[17]	-	425	194	111	619/2469	-	1	-	2	3	Skin: egcEx. Seed: concP, concK, epiT

Chr, chromosome; seq/gene size, total length of sequenced exons and introns/predicted gene size.

ISSN: 1471-2229