Table 4 List of CAPS markers polymorphic between Arabidopsis ecotypes Col-0 and Nd-0
CAPS marker | 1Restriction enzyme | 2Primers |
|---|---|---|
1H1L-1.6 | Rsa I, Tsp509I | F:CTAGAGCTTGAAAGTTGATG |
R:TTGAGTCCTTCTTGTCTG | ||
20B4L-1.6 | DdeI | F:CTAAGATGGGAATGTTGG |
R:GAACTCATTGTATGGACC | ||
40E1T7 | AccI | F:GGTCCACTTTGATTCAAGAT |
R:GCAAGCGATAGAACATAACG | ||
AF2 | DdeI | F:TCGTCGTTTTTGTTTCCTTTTTCTTA |
R:CCATTCATTTAGGCCCCGACTTTC | ||
B9-1.8 | TaqI | F:CATCTGCAACATCTTCCCCAG |
R:CGTATCCGCATTTCTTCACTGC | ||
CAT | TaqI, Tsp509I | F:GACCAGTAAGAGATCCAGATACTGCG |
R:CACAGTCATGCGACTCAAGACTTG | ||
ER | DdeI | F:GAGTTTATTCTGTGCCAAGTCCCTG |
R:CTAATGTAGTGATCTGCGAGGTAATC | ||
G4026 | TaqI, RsaI | F:GTACGGTTCTTCTTCCCTTA |
R:GGGGTCAGTTACATTACTAGC | ||
G4711 | DdeI | F:CCTGTGAAAAACGACGTGCAGTTTC |
R:ACCAAATCTTCGTGGGGCTCAGCAG | ||
GPA1.1 | Tsp509I | F:ATTCCTTGGTCTCCATCATC |
R:GGGATTTGATGAAGGAGAAC | ||
JM411 | DdeI | F:GCGAACCACTAAGAACTA |
R:CTCGACTTTGCCAAGGAT | ||
LFY3 | RsaI | F:GACGGCGTCTAGAAGATTC |
R:TAACTTATCGGGCTTCTGC | ||
MI342 | Tsp509I | F:GAAGTACAGCGGCTCAAAAAGAAG |
R:TTGCTGCCATGTAATACCTAAGTG | ||
M555 | AccI | F:CCTTTAATTAGTTATCAAATC |
R:CTCTTGAATTATTAAGTTGACTAG | ||
M59 | RsaI, Tsp509I | F:GTGCATGATATTGATGTACGC |
R:GAATGACATGAACACTTACACC | ||
MBK23A | TaqI | F:GATGATTAGGCGCAAAATTGAG |
R:ATTACCAGCCTGGCTTCAGG | ||
PAI1.1 | TaqI, RsaI, Tsp509I | F:GATCCTAAGGTATTGATATGATG |
R:GGTACAATTGATCTTCACTATAG | ||
T20D161 | TaqI, RsaI, Tsp509I | F:CGTATTTGCTGATTCATGAGC |
R:ATGGTTTACACTTGACAGAGC | ||
T6P5-4.8 | RsaI | F:TGAAAGACACCTGGGATAGGC |
R:CCAACTTTCGGGTCGGTTCC |