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Table 4 Associations between SCMV resistance and polymorphic sites in the Scmv1 genome region

From: Combined linkage and association mapping reveals candidates for Scmv1, a major locus involved in resistance to sugarcane mosaic virus (SCMV) in maize

Sites

Location

Allelesa

Frequency

P-value

FAP1360A/F7d

GLMb

SMAc

S454

3,-end of Zmtrx-h

T/G

15/50

0.0145

0.0039

G/T

S126

Intron of Zmtrx-h

T/C

5/68

0.0371

0.0281

C/C

PAV

Bin 6.01

0/1

19/75

9.56E-4

2.07E-5

1/1

  1. S454 was identified from the marker O1, while S126 was identified from the marker 7–5.
  2. aLetters (or number) in bold indicate the favourable alleles.
  3. bP-value was calculated using GLM in TASSEL 2.0.
  4. cP-value was calculated using single marker analysis.
  5. dThe alleles of inbred lines FAP1360 and F7.
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BMC Plant Biology

ISSN: 1471-2229

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