Figure 3

Graphical representation of the region of the qMD4.1 locus delimited by recombinants analysis. A) Recombinants identified in the CxA population delimiting the region between SNP markers PTP4 and PTP8 (dashed lines) and aligned to the reference genome (bottom). The red rectangle on the reference genome panel is the region delimited by the WxBy recombinants. B) Detailed region of the qMD4.1 delimited by the SNP marker SNP_IGA_411637 and SNP_IGA_412338 in the WxBy population and aligned to the reference genome (top). The numbers on the left in A) and B) represent the accession ID of the F₂ individuals, whereas a, h, and b in red colour represent the three ideal haplotypes. The brownish objects in A) and B) under the “transcript” headings on the reference genome panels represent the annotated genes.