Table 8 Most highly expressed grape EST contigs from non-vinifera libraries based on MPSS signature abundance.
Contig ID | Signature abundancea | Speciesb | BlastX definition [species of closest EST match] |
|---|---|---|---|
1025631, 1026062 | 17310 | Vae, Vru × Var | AF141899_1 putative aquaporin PIP1-3 [Vitis berlandieri × Vitis rupestris] |
1025594 | 13748 | Vae | UQFS ubiquitin precursor – common sunflower (fragment) |
1025587 | 6505 | Vae | AF121261_1 elongation factor 1-alpha 1; EF-1-alpha1 [Lilium longiflorum] |
1025940 | 5994 | Vru × Var | T06239 probable glutathione transferase (EC 2.5.1.18), 2,4-D inducible – soybean |
1025641 | 5460 | Vae | T10174 hypothetical protein – castor bean |
1026041 | 5403 | Vru × Var | T5J8.21 polyubiquitin (UBQ14) identical to GI:166795 [N. sylvestris] |
1026403 | 5403 | Vru × Var | C17L7.6 T32N4.13 score = 526.5, E = 1.9e-154, N = 3 |
1025620 | 4688 | Vae | ARF_ORYSA ADP-ribosylation factor |
1025855 | 4642 | Vru × Var | MT1_CASGL Metallothionein-like protein 1 (MT-1) |
1025856 | 4642 | Vru × Var | No hit |
1025842, 1025843 | 4208 | Vru × Var | AF281656_1 putative transcription factor [Vitis vinifera] |
1026742 | 3463 | Vru × Var | F12F1.24 putative aspartic proteinase similar to GB:AAC49730 |
1026015 | 2805 | Vru × Var | T12J5.2 M4E13.140 catalase |
1026595 | 2746 | Vru × Var | F16A14.17 F7A19.4 initiation factor 5A-4 identical to initiation factor 5A-4 [A. thaliana] |
1025571, 1025572 | 2435 | Vae | T09838 chlorophyll a/b binding protein precursor – upland cotton chloroplast |
1026113 | 2355 | Vru × Var | T23E18.12 dehydrin, putative similar to dehydrin GI:975646 from [Arabidopsis thaliana] |
1025893 | 2164 | Vru × Var | No hit |
1025946 | 1877 | Vru × Var | dormancy-associated protein -related [Arabidopsis thaliana] |
1025914 | 1840 | Vru × Var | cyclophilin [Ricinus communis] |
1026217 | 1726 | Vru × Var | AF121261_1 elongation factor 1-alpha 1; EF-1-alpha1 [Lilium longiflorum] |