Table 1 Molecular evolutionary analysis of OryzaTPS1s
Model | Parameters estimated | LnL | Significant? | Positively selected sitesa | ||||
|---|---|---|---|---|---|---|---|---|
Branch models | ||||||||
1ω | ω0 = 0.6296 | -2775.1401 | ||||||
2ωD | ω0 = 0.5532; ωD = 999.0000 | -2772.6923 | Yes (P < 0.05) | |||||
Branch-site models | ||||||||
Null (M1a) | ω0 = 0; ω1 = 1 | -2878.4062 | ||||||
Null (neutral) | Site class | 0 | 1 | 2a | 2b | -2772.1400 | ||
ωBb | 0 | 1 | 0 | 1 | ||||
ωA | 0 | 1 | 0.4000 | 0.4000 | ||||
Positive selection | Site class | 0 | 1 | 2a | 2b | -2769.7561 | Yes (vs neutral) (P < 0.05) | 32R (0.977*) |
318 L (0.976*) | ||||||||
ωBb | 0 | 1 | 0 | 1 | 429G (0.978*) | |||
ωA | 0 | 1 | 179.3823 | 179.3823 | 433I (0.955*) | |||
486P (0.977*) | ||||||||