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Table 5 Summary of rust resistance QTL identified in the S7 population detailing the QTL location on consensus map, additive effect and significance level across 2 sites (BIL03 IRR and BIL03 nonIRR and the combined analysis, BIL03 overall )

From: Two distinct classes of QTL determine rust resistance in sorghum

   

Allele effects b

QTL ID

LG

Peak cM a

BIL03 IRR

BIL03 nonIRR

BIL03 overall

QRustR_S7_1.1

1

19.94

-0.170**

NS

NS

QRustR_S7_1.2

1

61.5

0.245**

NS

NS

QRustR_S7_1.3

1

151.33

-0.133**

NS

NS

QRustR_S7_2.1

2

144.02

0.195**

NS

NS

QRustR_S7_3.1

3

10.58

0.191**

NS

NS

QRustR_S7_3.2

3

107.3014

-0.225**

-0.122**

-0.119**

QRustR_S7_3.3

3

137.16

-0.129**

NS

NS

QRustR_S7_4.1

4

71.44

0.169***

0.148***

0.150***

QRustR_S7_4.2

4

82.8

0.303**

0.200***

0.202***

QRustR_S7_4.3

4

95.7

NS

0.122**

0.125**

QRustR_S7_5.1

5

75.65

-0.223**

NS

NS

QRustR_S7_7.1

7

131.58

NS

0.133**

NS

QRustR_S7_8.1

8

70.7

-0.221***

-0.165***

-0.159***

QRustR_S7_9.1

9

52.72

NS

-0.127**

-0.169**

QRustR_S7_9.2

9

87.27

NS

-0.145**

-0.146**

QRustR_S7_9.3

9

108.8

NS

-0.118**

-0.111**

QRustR_S7_10.1

10

59.84

NS

-0.124**

-0.121**

QRustR_S7_10.2

10

75.9

NS

-0.129**

-0.137***

QRustR_S7_10.3

10

103.29

-0.152**

NS

NS

  1. aPeak position with maximum –log10P; bThe allelic effects are calculated as the effect of substitution of AA (R931945-2-2) allele by BB (S. bicolor subsp. verticilliflorum) allele. NS: not significant; **Significant (−log10P ≥ 3); ***Highly significant (−log10P ≥ 4).