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Table 1 Gene annotation of Hope Sr2 region and comparison with the corresponding region in CS

From: Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus

No.

Name

Annotation

Hope gene start

Hope gene end

CS gene id

CS gene pos

1

MSF_1$

Male sterility factor

29132

35097

ctg0011b.00010.1

8024

2

EP_1$

Hypothetical protein

39298

41832

ctg0011b.00020.1

16001

3

RKO_1$

Receptor kinase

45570

48036

ctg0011b.00030.1

21207

4

MSF_2$

Male sterility factor

174463

180047

ctg0011b.00040.1

130246

5

Flowering Locus T-like_1

Flowering Locus T-like protein

207129

208229

ctg0011b.00050.1

154860*

6

Flowering Locus T-like_2

Flowering Locus T-like protein

274176

275721

ctg0011b.00060.1

218850

7

Flowering Locus T-like_3

Flowering Locus T-like protein

322283

323263

ctg0011b.00070.1

281996

8

RKO_2

receptor kinase

329447

331621

ctg0011b.00080.1

293102

9

RKO_3

receptor kinase

332015

335105

ctg0011b.00090.1

295683

10

EMB_1

PPR repeat domain containing protein

339212

341395

ctg0011b.000100.1

307937

11

Flowering Locus T-like#

Flowering Locus T-like protein

-

-

ctg0011b.000110.1

351119

12

EMB_2#

PPR repeat domain containing protein

-

-

ctg0011b.000120.1

379263

13

WD domain*

similar to WD domain, G-beta repeat

349395

355055

ctg0011b.000130.1

385794

14

GLP_1

Germin-like protein

398118

398929

 

-

15

GLP_2

Germin-like protein

399614

400424

 

-

16

GLP_3

Germin-like protein

423764

424562

 

-

17

GLP_4

Germin-like protein

425172

425984

 

-

18

GLP_10*

Germin-like protein

444653

445216

  

19

GLP_6*

Germin-like protein

455726

456520

 

-

20

GLP_5*

Germin-like protein

463024

463811

 

-

21

GLP_8

Germin-like protein

474211

475020

 

-

22

GLP_9

Germin-like protein

475777

476588

 

-

23

GLP_7

Germin-like protein

508822

509633

 

-

24

TPR1

Tetratricopeptide repeat domain containing protein

546645

549809

ctg0011b.000140.1

435705

25

D8LAL2

Hypothetical protein

562871

565156

ctg0011b.000160.1

447301

26

CD882879

Hypothetical protein

587682

589820

 

464713

27

TPR2*

Tetratricopeptide repeat domain containing protein

613921

615236

ctg0011b.000170.1

498370

28

D8LAL1

Hypothetical protein

625926

626996

ctg0011b.000150.1

443924

29

CA696601

Hypothetical protein

670987

671361

  

30

TPR2*

Tetratricopeptide repeat domain containing protein

692673

695113

ctg0011b.000170.1

498370

31

CN010964

Hypothetical protein

710337

711484

 

574223*

32

CA694126

No annotation

712343

712774

 

507295*

33

HP626985

Hypothetical protein

776063

776392

 

507441*

34

CN010964

Hypothetical protein

809317

810476

 

574223*

35

FLA30

fasciclin-like arabinogalactan precursor

840622

841206

ctg0011b.000180.1

510269

36

BEX_1

beta-expansin 1a precursor

846394

847826

ctg0011b.000190.1

561427

37

BEX_2

beta-expansin 1a precursor

854813

856068

ctg0011b.000200.1

570188

38

BEX_3

beta-expansin 1a precursor

892334

893409

  

39

BM138011_1

BTB-domain containing protein

909112

909465

  

40

DOX_1$

disulfide oxidoreductase

914790

916571

ctg0011b.000210.1

590774

41

CA681101$

Hypothetical protein

923311

923709

 

599356

42

BM138011_2$

BTB-domain containing protein

926622

926983

 

602889

43

BTB-domain containing protein$

 

957404

959539

 

109661*

44

RGA_1$*

similar to disease resistance RPM1-like protein

960894

966749

ctg0011b.000220.1

704997

  1. $Recombining genes; *partial genes/pseudogenes; Not present in Hope.