Table 2 Targets of litchi miRNAs (or families)
miRNA | Target | Align score | Category | Cleavage abundance (tpb) | Target annotation |
|---|---|---|---|---|---|
Conserved targets for conserved miRNAs | |||||
lch-miR319 | lychee_2636 | 3.5 | 2 | 229.2261509 | transcription factor TCP4 |
lch-miR393 | lychee_55456 | 1 | 0 | 6189.106073 | auxin signaling F-box 2 |
lch-miR397 | lychee_9267 | 4 | 2 | 1910.217924 | laccase |
Non-conserved targets for conserved miRNAs | |||||
lch-miR159 | lychee_2636 | 3.5 | 2 | 229.2261509 | transcription factor TCP4 |
lychee_39039 | 4 | 2 | 382.0435848 | transcription factor WRKY28 | |
lch-miR396 | lychee_55389 | 1 | 3 | 229.2261509 | cysteine protease CP1 |
lychee_53269 | 3 | 2 | 152.8174339 | chalcone isomerase | |
lychee_9553 | 3.5 | 2 | 21012.39716 | serine/threonine-protein kinase SRK2A | |
lychee_15210 | 4 | 2 | 840.4958865 | transcription factor AP2/ERF | |
lychee_31188 | 4 | 2 | 764.0871695 | transcription factor WRKY7 | |
lychee_16455 | 3.5 | 2 | 229.2261509 | callose synthase 1 | |
Targets for other known miRNAs | |||||
lch-miR5252 | lychee_39716 | 3.5 | 2 | 458.4523017 | glucan endo-1,3-beta-D-glucosidase |
lch-miR858 | lychee_18326 | 2.5 | 0 | 7258.82811 | MYB29 family protein |
lychee_30086 | 4 | 0 | 3514.80098 | transcription repressor MYB1 | |
Targets for litchi-specific miRNAs | |||||
lch-miRC6 | lychee_57528 | 0 | 0 | 1203.848091 | hypothetical protein |
lch-miRC7 | lychee_30135 | 2.5 | 2 | 586.4900957 | NAC domain-containing protein |
lychee_37170 | 3.5 | 4 | 30.86789977 | unknown | |
lychee_7801 | 2.5 | 4 | 30.86789977 | Caleosin related protein | |
lch-miRC10 | lychee_4839 | 4 | 2 | 1142.112292 | predicted protein |