From: Characterization of the cork oak transcriptome dynamics during acorn development
Cluster | Transcript name | Transcription factor | Domain /Family | At Locus | At homologous | Annotation | counts | SEFa | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  |  |  |  | S1 | S2 | S3S4 | S5 | S8 |  |
A | Contig20395 | Vitis_vinifera_ GSVIVP00000629001 | MYB_DNA binding/MYB | AT5G57620 | MYB36 | MYB domain protein 36 | 24.2 | 0 | 0 | 0 | 0 | 1 |
A | Contig14583 | Vitis_vinifera_ GSVIVP00024505001 | B3/ARF | AT5G60450 | ARF4 | Auxin response factor 4 | 21.6 | 0 | 0 | 0 | 0 | 1 |
C | Contig20996 | Oryza_sativa_subsp._Indica_OsIBCD010288 | MYB_DNA binding/MYB-related | AT5G66390 | PRX72 | Peroxidase superfamily protein | 0 | 0 | 16.2 | 0 | 0 | 1 |
F | Contig14504 | Oryza_sativa_subsp._japonica_LOC_Os11g45530.1 | FAR1/FAR1 | AT1G76320 | FRS4, CPD25 | FAR1-related sequence 4 | 0 | 0 | 0 | 0 | 23.2 | 1 |
A | Contig23988 | Carica_papaya_emv.TU.supercontig_187.28 | KNOX1/HB | AT5G25220 | KNAT3 | KNOTTED1-like homeobox gene 3 | 35.6 | 0.8 | 3.8 | 11.6 | 13.8 | 0.54 |
B | Contig17627 | Vitis_vinifera_ GSVIVP00005632001 | AT5G11060 | KNAT4 | KNOTTED1-like homeobox gene 4 | 1.2 | 34 | 27.4 | 5.6 | 2 | 0.48 | |
E | Contig24728 | Carica_papaya_emv.TU.supercontig_996.1 | AP2/AP2-AREBP DUF260/LOB | AT4G25140 | OLEO1 | Oleosin 1 | 0 | 0 | 3 | 69.2 | 58.5 | 0.98 |
E | Contig20473 | Vitis_vinifera_ GSVIVP00016010001 | 0 | 0 | 8.2 | 428.2 | 192.4 | 0.99 | ||||
E | Contig23293 | Vitis_vinifera_ GSVIVP00016010001 | DUF260/LOB | AT3G27660 | OLEO4 | Oleosin 4 | 0 | 0 | 0 | 71 | 25.8 | 1 |
F | Qs-dev_rep_c103605 | Vitis_vinifera_ GSVIVP00016010001 | 0.4 | 0 | 0 | 9.2 | 39.6 | 0.80 | ||||
F | Qs-dev_c70574 | Vitis_vinifera_ GSVIVP00016010001 | AT5G40420 | OLEO2 | Oleosin 2 | 0.2 | 0 | 0 | 2.2 | 49.8 | 0.95 | |
B | Contig1681 | Carica_papaya_evm.TU.supercontig_3.229 | HLH/bHLH | AT5G08130 | BIM1 | Â | 0 | 22.8 | 0 | 1.2 | 8.8 | 0.70 |
D | Contig25637 | Vitis_vinifera_GSVIVP00008627001 | AT1G01260 | JAM2 | Jasmonate associated MYC2 like 2 | 5.2 | 16.6 | 7.4 | 21.6 | 0 | 0.43 | |
E | Contig18945 | Populus_trichocarpa_180347 | AT5G41315 | GL3, MYC6.2 | Glabra 3, Glabrous 3, MYC6.2 | 0 | 4.6 | 0.6 | 24.6 | 23.8 | 0.90 | |
A | Contig4505 | Populus_trichocarpa_218417 | NAM/NAC | AT1G56010 | NAC1 | NAC domain containing protein 1 | 34.2 | 2.2 | 0.6 | 0 | 0 | 0.92 |
A | Contig23086 | Populus_trichocarpa_714847 | AT1G34190 | NAC017, ANAC017 | NAC domain containing protein 17 | 20.2 | 0 | 0 | 11 | 4.6 | 0.56 | |
B | Contig23085 | 0 | 27.8 | 22.8 | 18.4 | 7 | 0.37 | |||||
A | Contig16452 | Vitis_vinifera_ GSVIVP00027622001 | AT4G27410 | RD26, ANAC072 | Responsive to desiccation 26 | 608.8 | 184.2 | 138.6 | 32 | 11 | 0.62 | |
B | Contig25368 | Vitis_vinifera_ GSVIVP00000471001 | AT4G35580 | NTL9 | NAC transcription factor-like 9 | 18.2 | 42 | 8.2 | 14.8 | 0 | 0.50 | |
D | Contig26025 | Vitis_vinifera_ GSVIVP00027621001 | AT3G15510 | NAC2 | NAC domain containing protein 2 | 1.2 | 1.6 | 12 | 19.8 | 0 | 0.57 |