Table 2 Phenotypic-expression correlation for 25 genes with significant cis- and trans-eQTL regulated by the major lamina shape QTL locus on linkage group X
P. trichocarpa Gene Model | cis/trans eQTL | Correlation Lamina Length | Correlation Lamina Width | Correlation Lamina Length/Width Ratio | Ath Ortholog | Ath Ortholog Annotation |
|---|---|---|---|---|---|---|
Potri.010G152600 | cis | −0.2354195 | −0.3668554 | 0.25168267 | AT1G10630 | ATARFA1F; GTP binding/phospholipase activator/protein binding |
estExt_Genewise1_v1.C_LG_X0900 | cis | 0.28153168 | 0.22276079 | 0.12428305 | AT2G03420 | similar to expressed protein |
estExt_Genewise1_v1.C_LG_X1905 | cis | −0.1180535 | −0.2092655 | 0.16315263 | AT5G05840 | similar to unknown protein |
Potri.010G146900 | cis | −0.2057423 | −0.2864154 | 0.15937637 | AT5G49480 | ATCP1 (CA2 + −BINDING PROTEIN 1); calcium ion binding |
Potri.010G144500 | cis | −0.1709655 | −0.2330248 | 0.09520016 | AT3G66654 | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein |
Potri.010G115500 | cis | −0.1655205 | −0.239631 | 0.13854495 | AT1G71110 | similar to unknown protein |
eugene3.00101684 | cis | −0.0327462 | −0.1340572 | 0.22250948 | AT1G79270 | ECT8 (evolutionarily conserved C-terminal region 8) |
eugene3.00101873 | cis | 0.13606338 | 0.00904373 | 0.27538385 | AT2G25770 | similar to unknown protein |
Potri.010G085300 | trans | −0.1625601 | −0.2031862 | 0.095351 | AT3G22600 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein |
fgenesh4_pg.C_LG_X001101 | cis | −0.1932028 | −0.2426184 | 0.10447822 | AT1G18390 | protein kinase family protein |
fgenesh4_pg.C_LG_X001267 | cis | −0.2074094 | −0.2653902 | 0.10578893 | AT3G14630 | CYP72A9 (cytochrome P450) |
Potri.010G120500 | cis | 0.27906541 | 0.1749712 | 0.21085259 | AT1G68220 | similar to unknown protein |
grail3.0022009901 | cis | 0.27753008 | 0.20094372 | 0.15049532 | AT4G00170 | vesicle-associated membrane family protein/VAMP family protein |
Potri.010G189300 | cis | −0.0907817 | −0.1946685 | 0.22753633 | AT3G11210 | GDSL-motif lipase/hydrolase family protein |
gw1.X.1611.1 | cis | −0.0336113 | −0.1425979 | 0.24313545 | AT5G05460 | hydrolase |
Potri.010G184700 | cis | 0.03487584 | −0.0635483 | 0.25117987 | AT4G35920 | MCA1 (MID1-COMPLEMENTING ACTIVITY 1) |
gw1.X.2067.1 | cis | 0.20184048 | 0.06762258 | 0.30451177 | AT3G11420 | fringe-related protein |
Potri.010G119300 | cis | 0.18423729 | 0.21675814 | −0.0307313 | AT1G15080 | LPP2 |
gw1.X.558.1 | cis | −0.2016639 | −0.2470379 | 0.10097016 | AT4G02080 | ATSAR2 |
gw1.X.613.1 | cis | −0.152675 | −0.2248164 | 0.13504918 | AT1G56430 | nicotianamine synthase |
Potri.010G149500 | cis | 0.17168568 | 0.0563584 | 0.20768151 | AT3G06510 | SFR2 (SENSITIVE TO FREEZING 2); hydrolase |
Potri.010G179600 | trans | 0.01835356 | 0.14446327 | −0.246553 | AT1G65470 | FAS1 |
eugene3.212260001 | trans | −0.2032587 | −0.2235336 | −0.0071332 | AT4G27570 | glycosyltransferase family protein |
fgenesh4_pg.C_scaffold_44000104 | trans | −0.0999934 | −0.205086 | 0.29000845 |  | No Hits |
fgenesh1_pg.C_LG_IX000767 | trans | −0.183402 | −0.2330726 | 0.09782444 |  | No Hits |