Skip to main content

Table 1 List of SNPs significantly associated with APR to the Ug99 race group in Kenya and Ethiopia. ‘Chromosome 0’ includes all unmapped SNP markers

From: Erratum to: Association mapping of North American spring wheat breeding germplasm reveals loci conferring resistance to Ug99 and other African stem rust races

SNPa

Chrb

Pos (cM)

P value

R2 (%)c

KenOff13d

KenMain13e

EthOff13f

EthOff14g

IWB1351

0

0.0

9.18E-04

1.4

-

-

-

+

IWB11987

0

0.0

2.71E-04

4.0

-

-

-

-

IWB13304

0

0.0

9.18E-04

1.4

-

-

-

+

IWB20617

0

0.0

8.92E-04

0.5

-

-

-

-

IWB40153

0

0.0

9.18E-04

1.4

-

-

-

+

IWB65634

0

0.0

2.18E-04

3.9

-

-

-

-

IWA3120

1B

90.3

9.07E-04

0.6

-

-

-

-

IWB21176

1B

90.3

9.64E-04

0.6

-

-

+

-

IWB31027

1B

90.3

9.64E-04

0.6

-

-

+

-

IWB56771

1B

90.3

9.34E-04

0.6

-

-

+

-

IWB59663

1B

90.3

9.64E-04

0.6

-

-

+

-

IWB49915

2A

122.5

9.18E-04

1.4

-

-

-

+

IWB49914

2A

123.6

9.18E-04

1.4

-

-

-

+

IWB22672

2A

159.7

9.98E-04

0.6

-

-

+

-

IWB2369

2B

48.5

7.68E-04

0.4

-

-

-

-

IWA4275

2B

105.9

8.75E-04

1.4

-

-

-

-

IWA8534

2B

126.1

1.80E-04

0.3

-

+

-

-

IWB23660

2B

126.3

1.79E-04

0.3

-

+

-

-

IWB25868

2B

126.3

3.11E-04

0.7

-

+

-

-

IWB69631

2B

126.3

3.11E-04

0.7

-

+

-

-

IWB25869

2B

126.5

3.11E-04

0.7

-

+

-

-

IWB32143

2B

157.2

5.05E-04

4.6

-

-

-

-

IWB8481

2D

9.2

8.44E-04

0.5

-

-

-

-

IWA5203

3B

11.5

7.97E-04

0.4

-

-

-

-

IWB30730

3B

11.5

7.74E-04

1.3

-

-

-

-

IWB12193

3B

11.6

3.24E-04

4.2

-

+

-

-

IWB49924

3B

11.6

5.65E-04

0.2

-

-

-

-

IWB65737

3B

11.6

9.15E-04

0.6

-

-

-

-

IWB60424

3B

13.8

5.02E-04

0.1

-

-

-

-

IWB36021

3B

14.1

8.31E-04

1.3

-

-

-

-

IWA2493

3B

32.2

1.49E-04

0.2

-

-

+

-

IWB40004

4A

30.9

9.12E-04

0.6

-

+

-

-

IWB52694

4A

43.4

9.96E-05

3.2

-

+

-

-

IWB46973

4A

47.0

8.26E-04

1.3

-

+

-

-

IWB56556

4A

47.0

7.54E-04

1.3

-

-

-

-

IWB67877

4A

47.0

8.34E-04

1.3

-

-

-

-

IWB47184

5A

69.6

3.44E-04

0.3

-

-

+

-

IWA233

6A

66.0

8.48E-04

1.3

-

+

-

-

IWB24757

6B

119.7

6.33E-04

1.1

-

-

-

-

IWB35697

6B

119.7

1.77E-05

1.3

-

-

+

+

IWB6474

6B

119.7

6.33E-04

1.1

-

-

-

-

IWB45581

6B

120.6

3.00E-04

0.6

-

-

-

-

IWB5070

7A

211.0

2.19E-04

3.9

-

-

-

-

IWB1874

7A

212.7

3.18E-04

0.3

-

-

-

-

IWB4830

7A

212.7

4.50E-04

4.5

-

-

+

-

IWB62560

7A

213.2

2.30E-04

0.6

-

-

-

-

IWB47548

7B

153.4

6.50E-04

0.3

-

-

-

-

IWA4175

7B

177.1

9.52E-04

0.6

-

-

-

-

  1. aUnderlined SNP markers were detected during the ‘combined’ mapping approach but not during the ‘APR-specific’ mapping approach. SNP markers in bold were detected in both mapping approaches
  2. bChr ‘0’ indicates unmapped SNPs that were significant in the analysis
  3. cR2 Indicates percent of phenotypic variation explained by the significant locus
  4. d-gThe ‘+’ sign indicates that the SNP was also detected in GWAS results in each of the environments. The ‘-’ sign indicates that the SNP was detected only in combined analysis of all environments, and not in individual environments