Table 1 Summary of the de novo assembly of transcriptome and genome and SSR loci calling
Transcriptome | Genome | |
|---|---|---|
Raw data | 4.0 Gb | 33.5 Gb |
Total number of contigs | 186,778 | 8,130,350 |
Total length of contigs | 209 Mb | 1.41 Gb |
Total number of the contigs with SSR locus | 19,674 | 89,983 |
The frequency of SSR occurrence | One locus per 11.1 kb | One locus per 16.8 kb |
Contigs N50 | 1,428 bp | 275 bp |
Average contig length | 1,138 bp | 186 bp |
Maximum contig length | 16,475 bp | 8,770 bp |